Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09153 | Canola | cytosol | 79.63 | 74.14 |
| CDY09155 | Canola | cytosol | 46.91 | 41.3 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 26.54 | 38.05 |
| CDX88790 | Canola | nucleus | 48.77 | 28.73 |
| CDX71005 | Canola | nucleus | 48.15 | 28.36 |
| CDX92341 | Canola | nucleus | 43.83 | 27.2 |
| CDY35706 | Canola | nucleus | 50.0 | 27.0 |
| CDY26948 | Canola | nucleus | 42.59 | 26.54 |
| CDX77140 | Canola | nucleus | 32.1 | 24.19 |
| CDY09158 | Canola | plastid | 51.85 | 24.14 |
| CDY30525 | Canola | cytosol, nucleus, plastid | 31.48 | 23.18 |
| AT5G22650.1 | Thale cress | nucleus | 41.98 | 22.22 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 40.12 | 20.63 |
| PGSC0003DMT400005672 | Potato | nucleus | 36.42 | 20.34 |
| Solyc11g066840.1.1 | Tomato | nucleus | 37.65 | 19.24 |
| PGSC0003DMT400068253 | Potato | cytosol | 37.65 | 17.13 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 35.8 | 16.43 |
| GSMUA_Achr10P... | Banana | plastid | 36.42 | 15.78 |
| CDY10359 | Canola | nucleus | 31.48 | 14.33 |
| CDY59274 | Canola | plastid | 30.25 | 11.4 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 7.41 | 10.71 |
| CDX70287 | Canola | nucleus | 11.11 | 9.18 |
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 6.17 | 8.55 |
Protein Annotations
| EnsemblPlants:CDY59279 | EnsemblPlantsGene:GSBRNA2T00025846001 | Gene3D:2.60.120.340 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | ProteinID:CDY59279 |
| ProteinID:CDY59279.1 | SEG:seg | UniParc:UPI0004EAFA36 | UniProt:A0A078J7R4 | MapMan:12.3.2.2 | : |
Description
BnaCnng34610DBnaCnng34610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7R4]
Coordinates
chrLK033746:-:33627..36691
Molecular Weight (calculated)
17764.2 Da
IEP (calculated)
3.881
GRAVY (calculated)
-0.495
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGAKVEA GKPLKVKPDE DYLIHLSRAC IFNGKEGETA LLDVTVDGKK FVIGYLSQEK IPQINLDLFF EKEFELSHSL ERGSVDFTGY KTPDLDEDDD
101: SSSSEDYYTS SDSEEEEEVM VHSTITANGS AGAAASSVAK PAEGASVCTL WMDVDEDDSA DE
101: SSSSEDYYTS SDSEEEEEVM VHSTITANGS AGAAASSVAK PAEGASVCTL WMDVDEDDSA DE
001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA
Arabidopsis Description
HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.