Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g066840.1.1 | Tomato | nucleus | 75.52 | 69.09 |
| PGSC0003DMT400068253 | Potato | cytosol | 73.79 | 60.11 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 17.24 | 44.25 |
| Bra002425.1-P | Field mustard | nucleus | 34.83 | 38.7 |
| Bra006629.1-P | Field mustard | nucleus | 36.21 | 38.46 |
| Bra020209.1-P | Field mustard | nucleus | 39.66 | 38.33 |
| CDX92341 | Canola | nucleus | 34.48 | 38.31 |
| CDX88790 | Canola | nucleus | 36.21 | 38.18 |
| CDY26948 | Canola | nucleus | 34.14 | 38.08 |
| AT3G44750.1 | Thale cress | nucleus | 32.07 | 37.96 |
| CDX71005 | Canola | nucleus | 35.86 | 37.82 |
| EES19871 | Sorghum | nucleus | 38.97 | 37.79 |
| CDY35706 | Canola | nucleus | 38.97 | 37.67 |
| CDY59279 | Canola | cytosol | 20.34 | 36.42 |
| Bra020206.1-P | Field mustard | cytosol | 23.1 | 36.41 |
| CDY09155 | Canola | cytosol | 23.1 | 36.41 |
| TraesCS1D01G454400.2 | Wheat | nucleus | 38.97 | 36.33 |
| Zm00001d038832_P002 | Maize | nucleus | 36.55 | 35.33 |
| PGSC0003DMT400006927 | Potato | nucleus | 32.76 | 35.32 |
| Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 18.62 | 35.29 |
| TraesCS1A01G445700.4 | Wheat | nucleus | 37.59 | 35.28 |
| Os05t0597100-01 | Rice | nucleus | 35.52 | 34.68 |
| PGSC0003DMT400021644 | Potato | nucleus | 34.14 | 34.49 |
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 13.79 | 34.19 |
| AT5G22650.1 | Thale cress | nucleus | 35.86 | 33.99 |
| EES20078 | Sorghum | nucleus | 35.52 | 33.55 |
| CDY09158 | Canola | plastid | 39.66 | 33.05 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 35.17 | 32.38 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 39.31 | 32.29 |
| Os01t0909150-00 | Rice | cytosol | 12.41 | 30.25 |
| EES04076 | Sorghum | nucleus | 28.62 | 29.96 |
| CDY09153 | Canola | cytosol | 17.93 | 29.89 |
| Bra020204.1-P | Field mustard | cytosol | 17.93 | 29.89 |
| HORVU3Hr1G092400.1 | Barley | nucleus | 6.55 | 29.69 |
| Zm00001d011139_P005 | Maize | cytosol | 30.0 | 27.97 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 10.69 | 27.68 |
| HORVU1Hr1G095140.2 | Barley | nucleus | 14.48 | 27.63 |
| Zm00001d012092_P001 | Maize | nucleus | 26.9 | 27.37 |
| Zm00001d042433_P001 | Maize | nucleus | 22.76 | 26.83 |
| Os01t0909100-01 | Rice | nucleus, peroxisome | 22.41 | 26.64 |
| GSMUA_Achr10P... | Banana | plastid | 33.45 | 25.94 |
| KXG20698 | Sorghum | nucleus | 26.55 | 24.6 |
| KXG33961 | Sorghum | nucleus | 22.41 | 24.16 |
| Zm00001d014548_P002 | Maize | cytosol | 14.83 | 22.4 |
| TraesCS3B01G450400.1 | Wheat | nucleus | 28.62 | 21.96 |
| Os01t0909500-02 | Rice | cytosol | 16.9 | 20.76 |
| TraesCS3B01G450300.1 | Wheat | nucleus | 24.48 | 18.54 |
| TraesCS3D01G410300.2 | Wheat | nucleus | 23.1 | 18.41 |
| HORVU3Hr1G092390.4 | Barley | nucleus, plastid | 25.86 | 17.73 |
| TraesCS3A01G415200.1 | Wheat | nucleus | 23.79 | 17.12 |
| TraesCS3D01G410400.1 | Wheat | nucleus | 21.38 | 14.35 |
| CDY59274 | Canola | plastid | 20.0 | 13.49 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400005672 | EnsemblPlantsGene:PGSC0003DMG400002221 | EntrezGene:102593361 | Gene3D:2.60.120.340 | ncoils:Coil | PANTHER:PTHR31802 |
| PANTHER:PTHR31802:SF8 | PGSC:PGSC0003DMG400002221 | RefSeq:XP_015165458.1 | SEG:seg | UniParc:UPI000294A96F | UniProt:M0ZQ89 |
| MapMan:12.3.2.2 | : | : | : | : | : |
Description
Deacetylase [Source:PGSC_GENE;Acc:PGSC0003DMG400002221]
Coordinates
chr4:+:16702348..16703278
Molecular Weight (calculated)
31445.2 Da
IEP (calculated)
4.683
GRAVY (calculated)
-1.037
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGVEVKA GQTLKVKPEL FKLIHVSQAA IGEVKDVKEA KYVPLRLTVG DNSYVIGTLS AEDRPQLMFD LVFEKEFELS HGWKNGSVHF IGYTADDPCG
101: DEIDSGDDVF SAEENVLEAL NGKLEADVKD VKPDAKKSAP VKDEKNAKVA ESKKEAESDE DDSDDSDDVP LGMEGMDFSG DSEDDDDSEE DDDSEEETPK
201: KVEQKKRPAP SPKVAPGSGK KAKQATLDNK SGGKKGPATP FAKQNGKPAF NGNNKPKPQS PKSGGQFSGN KSNSKNFSGQ KNFKGKQGRK
101: DEIDSGDDVF SAEENVLEAL NGKLEADVKD VKPDAKKSAP VKDEKNAKVA ESKKEAESDE DDSDDSDDVP LGMEGMDFSG DSEDDDDSEE DDDSEEETPK
201: KVEQKKRPAP SPKVAPGSGK KAKQATLDNK SGGKKGPATP FAKQNGKPAF NGNNKPKPQS PKSGGQFSGN KSNSKNFSGQ KNFKGKQGRK
001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA
Arabidopsis Description
HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.