Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26579155
|
msms PMID:
26579155
doi
Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G445700.4 | Wheat | nucleus | 85.53 | 86.08 |
| Os05t0597100-01 | Rice | nucleus | 65.59 | 68.69 |
| HORVU1Hr1G095140.2 | Barley | nucleus | 32.15 | 65.79 |
| EES19871 | Sorghum | nucleus | 55.63 | 57.86 |
| Zm00001d038832_P002 | Maize | nucleus | 53.38 | 55.33 |
| EES20078 | Sorghum | nucleus | 52.41 | 53.09 |
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 19.29 | 51.28 |
| Solyc09g009030.2.1 | Tomato | nucleus | 43.09 | 49.81 |
| PGSC0003DMT400006927 | Potato | nucleus | 42.12 | 48.7 |
| PGSC0003DMT400021644 | Potato | nucleus | 42.77 | 46.34 |
| KRH26575 | Soybean | nucleus | 45.02 | 45.6 |
| Solyc10g085560.1.1 | Tomato | nucleus | 44.37 | 44.95 |
| KRH22734 | Soybean | nucleus | 27.01 | 43.52 |
| KRH67840 | Soybean | nucleus | 40.19 | 43.4 |
| VIT_08s0007g03940.t01 | Wine grape | nucleus | 40.51 | 42.28 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 47.91 | 42.21 |
| KRG96126 | Soybean | nucleus | 39.23 | 41.64 |
| KRH25160 | Soybean | nucleus | 39.55 | 41.14 |
| KRH30517 | Soybean | nucleus | 37.3 | 40.14 |
| PGSC0003DMT400005672 | Potato | nucleus | 36.33 | 38.97 |
| Zm00001d011139_P005 | Maize | cytosol | 37.94 | 37.94 |
| Solyc11g066840.1.1 | Tomato | nucleus | 38.26 | 37.54 |
| Bra034373.1-P | Field mustard | nucleus | 24.44 | 35.35 |
| CDY30525 | Canola | cytosol, nucleus, plastid | 24.76 | 35.0 |
| AT2G27840.3 | Thale cress | cytosol | 22.83 | 34.98 |
| CDX77140 | Canola | nucleus | 23.79 | 34.42 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 12.22 | 33.93 |
| GSMUA_Achr8P01440_001 | Banana | extracellular | 24.76 | 32.35 |
| PGSC0003DMT400068253 | Potato | cytosol | 34.41 | 30.06 |
| TraesCS3D01G410300.2 | Wheat | nucleus | 29.58 | 25.27 |
| TraesCS3D01G410400.1 | Wheat | nucleus | 24.12 | 17.36 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G454400.2 | EnsemblPlantsGene:TraesCS1D01G454400 | Gene3D:2.60.120.340 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | PFscan:PS50157 | ScanProsite:PS00028 |
| SEG:seg | MapMan:12.3.2.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:495111245..495113949
Molecular Weight (calculated)
33610.9 Da
IEP (calculated)
4.408
GRAVY (calculated)
-1.127
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGLEVKP NQSVKVSPDD EHFLHLSQGA LGEVKKDDKA TMFVKIGDQK LAIGTLSTDK FPQIQFDLVF EKEFELSHNS KTSSVFFSGY KVFQPAEGDE
101: MDFDSEDESE EEEEEKIIPA LTKENGKPEA KEQKKQVKID TAAHSKSKAA AKDVGKSKKD DDSDDDDDSD EDDSEDDSGD DGALIPMEDD SDDSEDGDDS
201: SDDSEDSSDE EEEETPKKPE TGKKRAAGSV LKTPVTDKKA KIATPSGQKT GDKKGAVHVA TPHPAKKAGK TPATSEKSPK SGGSVACKSC SKTFNSEGAL
301: ASHSKAKHEA K
101: MDFDSEDESE EEEEEKIIPA LTKENGKPEA KEQKKQVKID TAAHSKSKAA AKDVGKSKKD DDSDDDDDSD EDDSEDDSGD DGALIPMEDD SDDSEDGDDS
201: SDDSEDSSDE EEEETPKKPE TGKKRAAGSV LKTPVTDKKA KIATPSGQKT GDKKGAVHVA TPHPAKKAGK TPATSEKSPK SGGSVACKSC SKTFNSEGAL
301: ASHSKAKHEA K
001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA
Arabidopsis Description
HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.