Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77140 | Canola | nucleus | 40.39 | 38.14 |
| Os01t0909150-00 | Rice | cytosol | 21.67 | 36.97 |
| Bra034373.1-P | Field mustard | nucleus | 35.96 | 33.95 |
| CDY30525 | Canola | cytosol, nucleus, plastid | 36.45 | 33.64 |
| AT3G44750.1 | Thale cress | nucleus | 32.02 | 26.53 |
| Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 19.7 | 26.14 |
| TraesCS1D01G454400.2 | Wheat | nucleus | 34.98 | 22.83 |
| EES19871 | Sorghum | nucleus | 33.5 | 22.74 |
| Zm00001d038832_P002 | Maize | nucleus | 31.53 | 21.33 |
| EES04076 | Sorghum | nucleus | 29.06 | 21.3 |
| AT5G22650.1 | Thale cress | nucleus | 32.02 | 21.24 |
| Zm00001d014548_P002 | Maize | cytosol | 19.7 | 20.83 |
| TraesCS1A01G445700.4 | Wheat | nucleus | 31.03 | 20.39 |
| Zm00001d012092_P001 | Maize | nucleus | 28.57 | 20.35 |
| AT5G03740.1 | Thale cress | nucleus | 29.06 | 20.07 |
| EES20078 | Sorghum | nucleus | 29.56 | 19.54 |
| Zm00001d042433_P001 | Maize | nucleus | 23.65 | 19.51 |
| KXG33961 | Sorghum | nucleus | 24.14 | 18.22 |
| Zm00001d011139_P005 | Maize | cytosol | 26.6 | 17.36 |
| KXG20698 | Sorghum | nucleus | 26.11 | 16.93 |
| TraesCS3B01G450400.1 | Wheat | nucleus | 28.57 | 15.34 |
| GSMUA_Achr8P01440_001 | Banana | extracellular | 15.76 | 13.45 |
| HORVU3Hr1G092400.1 | Barley | nucleus | 3.94 | 12.5 |
| TraesCS3D01G410300.2 | Wheat | nucleus | 20.69 | 11.54 |
| TraesCS3B01G450300.1 | Wheat | nucleus | 21.67 | 11.49 |
| TraesCS3A01G415200.1 | Wheat | nucleus | 22.17 | 11.17 |
| TraesCS3D01G410400.1 | Wheat | nucleus | 23.65 | 11.11 |
| HORVU3Hr1G092390.4 | Barley | nucleus, plastid | 20.2 | 9.69 |
| HORVU1Hr1G095140.2 | Barley | nucleus | 6.9 | 9.21 |
Protein Annotations
| MapMan:12.3.2.2 | Gene3D:2.60.120.340 | EntrezGene:817331 | ProteinID:AAC73016.2 | EMBL:AF255713 | EMBL:AK229619 |
| ProteinID:ANM62648.1 | ArrayExpress:AT2G27840 | EnsemblPlantsGene:AT2G27840 | RefSeq:AT2G27840 | TAIR:AT2G27840 | RefSeq:AT2G27840-TAIR-G |
| EnsemblPlants:AT2G27840.3 | EMBL:BT006162 | EMBL:BT008535 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 |
| GO:GO:0006325 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010162 | GO:GO:0016043 | GO:GO:0016569 |
| GO:GO:0016787 | Symbol:HDT4 | RefSeq:NP_565661.2 | RefSeq:NP_850109.1 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 |
| UniProt:Q9M4T3 | UniParc:UPI00000A4CB2 | SEG:seg | : | : | : |
Description
HDT4Histone deacetylase HDT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4T3]
Coordinates
chr2:+:11861806..11863908
Molecular Weight (calculated)
22652.2 Da
IEP (calculated)
4.090
GRAVY (calculated)
-0.746
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGIEIKP GKPFKVIQKD GFMVHASQVT LGDVEKVKKD ETFAVYVKIG DDENGFMIGN LSQKFPQFSI DLYLGHEFEI SHNSTSSVYL IGYRTFDAFD
101: ELDEEIDSDS ELDEYMEQQI AALPQNEINP EEDDESDSDE MGLDEDDDSS DEEDVEAEAP LKVAPPSKKM PNGAFEIAKG GKKNKSSGGK KRCPFPCGPS
201: CKK
101: ELDEEIDSDS ELDEYMEQQI AALPQNEINP EEDDESDSDE MGLDEDDDSS DEEDVEAEAP LKVAPPSKKM PNGAFEIAKG GKKNKSSGGK KRCPFPCGPS
201: CKK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.