Factsheet for Bra034373.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30525	Canola	cytosol, nucleus, plastid	87.91	85.91
CDX77140	Canola	nucleus	83.26	83.26
Os01t0909150-00	Rice	cytosol	22.79	41.18
AT2G27840.3	Thale cress	cytosol	33.95	35.96
Zm00001d012095_P001	Maize	cytosol, nucleus, plastid	23.26	32.68
Bra020206.1-P	Field mustard	cytosol	24.19	28.26
EES04076	Sorghum	nucleus	33.95	26.35
Bra020204.1-P	Field mustard	cytosol	20.47	25.29
Bra020209.1-P	Field mustard	nucleus	34.42	24.67
TraesCS1D01G454400.2	Wheat	nucleus	35.35	24.44
EES19871	Sorghum	nucleus	33.95	24.41
Bra002425.1-P	Field mustard	nucleus	29.3	24.14
Bra006629.1-P	Field mustard	nucleus	29.77	23.44
Zm00001d012092_P001	Maize	nucleus	30.7	23.16
EES20078	Sorghum	nucleus	33.02	23.13
Zm00001d038832_P002	Maize	nucleus	32.09	23.0
TraesCS1A01G445700.4	Wheat	nucleus	32.09	22.33
Zm00001d014548_P002	Maize	cytosol	19.53	21.88
Zm00001d042433_P001	Maize	nucleus	24.19	21.14
Zm00001d011139_P005	Maize	cytosol	30.23	20.9
KXG33961	Sorghum	nucleus	22.79	18.22
KXG20698	Sorghum	nucleus	26.51	18.21
GSMUA_Achr8P01440_001	Banana	extracellular	18.6	16.81
Bra009513.1-P	Field mustard	nucleus, plastid	26.05	15.56
TraesCS3B01G450400.1	Wheat	nucleus	25.12	14.29
HORVU1Hr1G095140.2	Barley	nucleus	9.3	13.16
TraesCS3D01G410300.2	Wheat	nucleus	19.53	11.54
TraesCS3B01G450300.1	Wheat	nucleus	20.47	11.49
TraesCS3A01G415200.1	Wheat	nucleus	20.93	11.17
HORVU3Hr1G092390.4	Barley	nucleus, plastid	20.47	10.4
TraesCS3D01G410400.1	Wheat	nucleus	20.0	9.95
HORVU3Hr1G092400.1	Barley	nucleus	2.33	7.81

Protein Annotations

EnsemblPlants:Bra034373.1	EnsemblPlants:Bra034373.1-P	EnsemblPlantsGene:Bra034373	Gene3D:2.60.120.340	GO:GO:0000003	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0010162	ncoils:Coil	PANTHER:PTHR31802	PANTHER:PTHR31802:SF8	SEG:seg
UniParc:UPI0002543A84	UniProt:M4EZY0	MapMan:12.3.2.2	:	:	:

Description

AT2G27840 (E=7e-032) HDT4, HDA13, HDT04 | HDT4; histone deacetylase

Coordinates

chrA04:+:12193709..12195064

Molecular Weight (calculated)

23751.5 Da

IEP (calculated)

4.387

GRAVY (calculated)

-0.912

Length

215 amino acids

Sequence
(BLAST)

001: MEFWGIEIKP GKPTKVEQED GYMIHVSQIA IGEFNKVGDK TVQVFVKVGG DDKQKLLIGN LSQKVPQVLL DLLFEQDFEV SHECKSTSVY LLGYKTVDPL
101: DGEVNSDFDS EDEDIPMDMF QRELEKSKAN GLNGQKANLE DDETDSDEMG SDEDEDDSEE EEDTPVKVAP PSKKRPNGGA MNNNNTVASK KAKVANQQGG
201: HKGHKCGGVH PPKRN

Best Arabidopsis Sequence Match ( AT2G27840.3 )
(BLAST)

001: MEFWGIEIKP GKPFKVIQKD GFMVHASQVT LGDVEKVKKD ETFAVYVKIG DDENGFMIGN LSQKFPQFSI DLYLGHEFEI SHNSTSSVYL IGYRTFDAFD
101: ELDEEIDSDS ELDEYMEQQI AALPQNEINP EEDDESDSDE MGLDEDDDSS DEEDVEAEAP LKVAPPSKKM PNGAFEIAKG GKKNKSSGGK KRCPFPCGPS
201: CKK

Arabidopsis Description

HDT4Histone deacetylase HDT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4T3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.