Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042433_P001 | Maize | nucleus | 60.13 | 37.4 |
| Zm00001d012092_P001 | Maize | nucleus | 66.01 | 35.44 |
| EES04076 | Sorghum | nucleus | 64.05 | 35.38 |
| Zm00001d038832_P002 | Maize | nucleus | 48.37 | 24.67 |
| PGSC0003DMT400006927 | Potato | nucleus | 41.18 | 23.42 |
| KRH22734 | Soybean | nucleus | 29.41 | 23.32 |
| Bra034373.1-P | Field mustard | nucleus | 32.68 | 23.26 |
| Solyc09g009030.2.1 | Tomato | nucleus | 39.87 | 22.68 |
| CDY30525 | Canola | cytosol, nucleus, plastid | 31.37 | 21.82 |
| PGSC0003DMT400021644 | Potato | nucleus | 39.87 | 21.25 |
| Solyc10g085560.1.1 | Tomato | nucleus | 41.18 | 20.52 |
| CDX77140 | Canola | nucleus | 28.76 | 20.47 |
| KRH67840 | Soybean | nucleus | 37.91 | 20.14 |
| Zm00001d011139_P005 | Maize | cytosol | 40.52 | 19.94 |
| AT2G27840.3 | Thale cress | cytosol | 26.14 | 19.7 |
| KRH26575 | Soybean | nucleus | 39.22 | 19.54 |
| KRH30517 | Soybean | nucleus | 36.6 | 19.38 |
| Zm00001d014548_P002 | Maize | cytosol | 24.18 | 19.27 |
| VIT_08s0007g03940.t01 | Wine grape | nucleus | 37.25 | 19.13 |
| PGSC0003DMT400005672 | Potato | nucleus | 35.29 | 18.62 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 42.48 | 18.41 |
| KRG96126 | Soybean | nucleus | 34.64 | 18.09 |
| KRH25160 | Soybean | nucleus | 33.99 | 17.39 |
| Solyc11g066840.1.1 | Tomato | nucleus | 35.29 | 17.03 |
| TraesCS3B01G450400.1 | Wheat | nucleus | 41.83 | 16.93 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 11.11 | 15.18 |
| PGSC0003DMT400068253 | Potato | cytosol | 34.64 | 14.89 |
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 11.11 | 14.53 |
| TraesCS3D01G410400.1 | Wheat | nucleus | 31.37 | 11.11 |
| HORVU3Hr1G092400.1 | Barley | nucleus | 4.58 | 10.94 |
| GSMUA_Achr8P01440_001 | Banana | extracellular | 15.69 | 10.08 |
Protein Annotations
| EnsemblPlants:Zm00001d012095_P001 | EnsemblPlants:Zm00001d012095_T001 | EnsemblPlantsGene:Zm00001d012095 | Gene3D:2.60.120.340 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 |
| ProteinID:AQK98785.1 | SEG:seg | UniParc:UPI0008449CF3 | UniProt:A0A1D6G6G6 | MapMan:12.3.2.2 | : |
Description
Histone deacetylase HDT1
Coordinates
chr8:+:168180113..168181978
Molecular Weight (calculated)
16521.2 Da
IEP (calculated)
4.321
GRAVY (calculated)
-0.532
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGEEVKP GATVSCIVCD GLVIHLSQAA LGEPKKASEN VIVSVKINDK KLVLGTLSVE KHPQISCDLF FDKEFSAAKF PVKDVIQNAD ETSGDDDDFT
101: DSESEMSLED DSSSEEQTPS PNKTDVVVGK KRAIEAEAPS GKKAKSEQSA QKT
101: DSESEMSLED DSSSEEQTPS PNKTDVVVGK KRAIEAEAPS GKKAKSEQSA QKT
001: MEFWGIEVKS GKPVTVTPEE GILIHVSQAS LGECKNKKGE FVPLHVKVGN QNLVLGTLST ENIPQLFCDL VFDKEFELSH TWGKGSVYFV GYKTPNIEPQ
101: GYSEEEEEEV PAGNAAKAVA KPKAKPAEVK PAVDDEEDES DSDGMDEDDS DGEDSEEEEP TPKKPASSKK RANETTPKAP VSAKKAKVAV TPQKTDEKKK
201: GGKAANQSPK SASQVSCGSC KKTFNSGNAL ESHNKAKHAA AK
101: GYSEEEEEEV PAGNAAKAVA KPKAKPAEVK PAVDDEEDES DSDGMDEDDS DGEDSEEEEP TPKKPASSKK RANETTPKAP VSAKKAKVAV TPQKTDEKKK
201: GGKAANQSPK SASQVSCGSC KKTFNSGNAL ESHNKAKHAA AK
Arabidopsis Description
HDT1Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.