Factsheet for Zm00001d012092_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04076	Sorghum	nucleus	70.18	72.2
Zm00001d012095_P001	Maize	cytosol, nucleus, plastid	35.44	66.01
Zm00001d042433_P001	Maize	nucleus	53.33	61.79
HORVU3Hr1G092400.1	Barley	nucleus	10.18	45.31
Solyc09g009030.2.1	Tomato	nucleus	41.75	44.24
PGSC0003DMT400006927	Potato	nucleus	40.35	42.75
Zm00001d038832_P002	Maize	nucleus	42.46	40.33
PGSC0003DMT400021644	Potato	nucleus	40.35	40.07
Solyc10g085560.1.1	Tomato	nucleus	41.05	38.11
KRG96126	Soybean	nucleus	37.89	36.86
KRH67840	Soybean	nucleus	36.49	36.11
KRH26575	Soybean	nucleus	38.6	35.83
VIT_08s0007g03940.t01	Wine grape	nucleus	37.19	35.57
KRH25160	Soybean	nucleus	36.14	34.45
KRH22734	Soybean	nucleus	23.16	34.2
VIT_03s0132g00020.t01	Wine grape	nucleus	14.04	34.19
VIT_06s0061g01240.t01	Wine grape	nucleus	41.05	33.14
KRH30517	Soybean	nucleus	33.33	32.87
Bra034373.1-P	Field mustard	nucleus	23.16	30.7
CDY30525	Canola	cytosol, nucleus, plastid	23.51	30.45
TraesCS3B01G450400.1	Wheat	nucleus	40.35	30.42
CDX77140	Canola	nucleus	22.46	29.77
Zm00001d011139_P005	Maize	cytosol	31.58	28.94
AT2G27840.3	Thale cress	cytosol	20.35	28.57
Solyc11g066840.1.1	Tomato	nucleus	31.58	28.39
PGSC0003DMT400005672	Potato	nucleus	27.37	26.9
Zm00001d014548_P002	Maize	cytosol	17.89	26.56
VIT_06s0009g03080.t01	Wine grape	nucleus	9.12	23.21
PGSC0003DMT400068253	Potato	cytosol	28.77	23.03
GSMUA_Achr8P01440_001	Banana	extracellular	18.95	22.69
TraesCS3D01G410400.1	Wheat	nucleus	28.42	18.75

Protein Annotations

EnsemblPlants:Zm00001d012092_P001	EnsemblPlants:Zm00001d012092_T001	EnsemblPlantsGene:Zm00001d012092	EntrezGene:103636373	Gene3D:2.60.120.340	Gene3D:3.30.160.60
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type
PANTHER:PTHR31802	PANTHER:PTHR31802:SF8	PFscan:PS50157	ProteinID:AQK98783.1	ScanProsite:PS00028	SEG:seg
SUPFAM:SSF57667	UniParc:UPI00001514AF	UniProt:K7V687	MapMan:12.3.2.2	:	:

Description

Histone deacetylase HDT1

Coordinates

chr8:+:168113678..168117039

Molecular Weight (calculated)

30436.6 Da

IEP (calculated)

4.497

GRAVY (calculated)

-0.875

Length

285 amino acids

Sequence
(BLAST)

001: MEFWGEEVKP GATVSCKVGD GLVIHLSQAA LGEPKKASEN AIVSVKIDDK KLVLGTLSVE KHPQISCDLV FDKDFELSHN SKTASVFFCG YKSPVPLFES
101: DSGEDSSDEE VEPDLIPMQN NEIKISTAKV PVKVGIQNAD EDETSSGDDD DFTDSDSEMS EEDESSDEDE VSSDTDTSDD SGSEEQTPTP KKTEVVVGKK
201: RAIEAETPSG KKAKSEQSAQ KTGDKVSTSH PAKQSSKTPA DKSTKTPTAD KKSPKSGSHA CKSCSKSFGS ASALESHQKA KKHEA

Best Arabidopsis Sequence Match ( AT3G44750.1 )
(BLAST)

001: MEFWGIEVKS GKPVTVTPEE GILIHVSQAS LGECKNKKGE FVPLHVKVGN QNLVLGTLST ENIPQLFCDL VFDKEFELSH TWGKGSVYFV GYKTPNIEPQ
101: GYSEEEEEEE EEVPAGNAAK AVAKPKAKPA EVKPAVDDEE DESDSDGMDE DDSDGEDSEE EEPTPKKPAS SKKRANETTP KAPVSAKKAK VAVTPQKTDE
201: KKKGGKAANQ SPKSASQVSC GSCKKTFNSG NALESHNKAK HAAAK

Arabidopsis Description

HDT1Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.