Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g085560.1.1 | Tomato | nucleus | 94.77 | 88.6 |
| PGSC0003DMT400006927 | Potato | nucleus | 64.11 | 68.4 |
| HORVU3Hr1G092400.1 | Barley | nucleus | 12.89 | 57.81 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 20.21 | 51.33 |
| KRH67840 | Soybean | nucleus | 51.22 | 51.04 |
| VIT_08s0007g03940.t01 | Wine grape | nucleus | 52.26 | 50.34 |
| KRG96126 | Soybean | nucleus | 49.83 | 48.81 |
| Os05t0597100-01 | Rice | nucleus | 45.99 | 44.44 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 48.78 | 44.44 |
| TraesCS1D01G454400.2 | Wheat | nucleus | 46.34 | 42.77 |
| EES19871 | Sorghum | nucleus | 43.21 | 41.47 |
| EES04076 | Sorghum | nucleus | 39.72 | 41.16 |
| AT5G03740.1 | Thale cress | nucleus | 41.81 | 40.82 |
| TraesCS1A01G445700.4 | Wheat | nucleus | 43.55 | 40.45 |
| EES20078 | Sorghum | nucleus | 43.21 | 40.39 |
| Zm00001d012092_P001 | Maize | nucleus | 40.07 | 40.35 |
| Zm00001d038832_P002 | Maize | nucleus | 41.81 | 40.0 |
| Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 21.25 | 39.87 |
| HORVU1Hr1G095140.2 | Barley | nucleus | 20.91 | 39.47 |
| Os01t0909150-00 | Rice | cytosol | 16.03 | 38.66 |
| CDX70287 | Canola | nucleus | 24.74 | 36.22 |
| PGSC0003DMT400005672 | Potato | nucleus | 34.49 | 34.14 |
| Zm00001d042433_P001 | Maize | nucleus | 28.92 | 33.74 |
| GSMUA_Achr10P... | Banana | plastid | 43.55 | 33.42 |
| CDY10359 | Canola | nucleus | 40.07 | 32.3 |
| KXG20698 | Sorghum | nucleus | 34.49 | 31.63 |
| Bra009513.1-P | Field mustard | nucleus, plastid | 38.68 | 30.83 |
| Zm00001d011139_P005 | Maize | cytosol | 32.4 | 29.9 |
| KXG33961 | Sorghum | nucleus | 26.83 | 28.62 |
| PGSC0003DMT400068253 | Potato | cytosol | 34.84 | 28.09 |
| TraesCS3B01G450400.1 | Wheat | nucleus | 36.93 | 28.04 |
| Os01t0909100-01 | Rice | nucleus, peroxisome | 23.34 | 27.46 |
| Zm00001d014548_P002 | Maize | cytosol | 16.72 | 25.0 |
| TraesCS3D01G410300.2 | Wheat | nucleus | 31.01 | 24.45 |
| Os01t0909500-02 | Rice | cytosol | 19.16 | 23.31 |
| TraesCS3B01G450300.1 | Wheat | nucleus | 29.97 | 22.45 |
| TraesCS3A01G415200.1 | Wheat | nucleus | 30.66 | 21.84 |
| HORVU3Hr1G092390.4 | Barley | nucleus, plastid | 29.97 | 20.33 |
| TraesCS3D01G410400.1 | Wheat | nucleus | 20.91 | 13.89 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400021644 | EnsemblPlantsGene:PGSC0003DMG400008398 | EntrezGene:102595265 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | PFAM:PF13912 | PFscan:PS50157 |
| PGSC:PGSC0003DMG400008398 | RefSeq:XP_006338944.1 | ScanProsite:PS00028 | SEG:seg | UniParc:UPI000296C748 | UniProt:M1AFH0 |
| MapMan:12.3.2.2 | : | : | : | : | : |
Description
Histone deacetylase HDT1 [Source:PGSC_GENE;Acc:PGSC0003DMG400008398]
Coordinates
chr10:+:53356020..53360084
Molecular Weight (calculated)
31079.5 Da
IEP (calculated)
4.547
GRAVY (calculated)
-1.004
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGAEVKS GQPLSVQPGD DMILHLSQAS LGEVKKDKGS EPVCLSVTID GKKLVLGTLS SDKLPQQQFD LVFDRDFELS HNWKNGSIYF FGYKAANPFE
101: DEEDVDEDED ESDEEIPLTI ANNGKTEAKA IAKDSASTKQ KVRVVEFSKV AKAEDGDEST DESADEDDSM MGEDEEGDSD EDQSDESEEG TPKKAEPSRK
201: RPADSAAKTP VPDKKTKFLT PQKTDGKKGA VHVATPHPSK QAGKTPGNKP NQTPKSGGSL ACKTCNRTFG SENALESHSK AKHSVGK
101: DEEDVDEDED ESDEEIPLTI ANNGKTEAKA IAKDSASTKQ KVRVVEFSKV AKAEDGDEST DESADEDDSM MGEDEEGDSD EDQSDESEEG TPKKAEPSRK
201: RPADSAAKTP VPDKKTKFLT PQKTDGKKGA VHVATPHPSK QAGKTPGNKP NQTPKSGGSL ACKTCNRTFG SENALESHSK AKHSVGK
001: MEFWGIEVKS GKPVTVTPEE GILIHVSQAS LGECKNKKGE FVPLHVKVGN QNLVLGTLST ENIPQLFCDL VFDKEFELSH TWGKGSVYFV GYKTPNIEPQ
101: GYSEEEEEEE EEVPAGNAAK AVAKPKAKPA EVKPAVDDEE DESDSDGMDE DDSDGEDSEE EEPTPKKPAS SKKRANETTP KAPVSAKKAK VAVTPQKTDE
201: KKKGGKAANQ SPKSASQVSC GSCKKTFNSG NALESHNKAK HAAAK
101: GYSEEEEEEE EEVPAGNAAK AVAKPKAKPA EVKPAVDDEE DESDSDGMDE DDSDGEDSEE EEPTPKKPAS SKKRANETTP KAPVSAKKAK VAVTPQKTDE
201: KKKGGKAANQ SPKSASQVSC GSCKKTFNSG NALESHNKAK HAAAK
Arabidopsis Description
HDT1Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.