Factsheet for Bra009513.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
golgi 1
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70287	Canola	nucleus	43.06	79.08
CDY10359	Canola	nucleus	73.06	73.88
AT5G03740.1	Thale cress	nucleus	42.22	51.7
VIT_08s0007g03940.t01	Wine grape	nucleus	36.39	43.96
PGSC0003DMT400006927	Potato	nucleus	29.17	39.03
PGSC0003DMT400021644	Potato	nucleus	30.83	38.68
Solyc09g009030.2.1	Tomato	nucleus	28.89	38.66
KRH67840	Soybean	nucleus	30.56	38.19
KRG96126	Soybean	nucleus	30.56	37.54
GSMUA_Achr8P07580_001	Banana	cytosol	11.67	37.17
GSMUA_Achr3P22840_001	Banana	nucleus	31.94	36.51
Solyc10g085560.1.1	Tomato	nucleus	31.11	36.48
Bra020209.1-P	Field mustard	nucleus	30.0	36.0
Bra006629.1-P	Field mustard	nucleus	26.94	35.53
Bra002425.1-P	Field mustard	nucleus	23.61	32.57
GSMUA_Achr10P...	Banana	plastid	30.56	29.41
Bra020204.1-P	Field mustard	cytosol	14.17	29.31
Bra020206.1-P	Field mustard	cytosol	14.72	28.8
Bra034373.1-P	Field mustard	nucleus	15.56	26.05

Protein Annotations

MapMan:12.3.2.2	Gene3D:3.30.160.60	EnsemblPlantsGene:Bra009513	EnsemblPlants:Bra009513.1	EnsemblPlants:Bra009513.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009414	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737
GO:GO:0009987	GO:GO:0043565	GO:GO:0045892	InterPro:IPR013087	UniProt:M4CZ66	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR31802	PANTHER:PTHR31802:SF8	UniParc:UPI0002547B48	InterPro:Znf_C2H2_type	SEG:seg

Description

AT5G03740 (E=2e-031) HD2C, HDT3 | HD2C (HISTONE DEACETYLASE 2C); histone deacetylase/ nucleic acid binding / transcription repressor/ zinc ion binding

Coordinates

chrA10:-:17010728..17012399

Molecular Weight (calculated)

39681.2 Da

IEP (calculated)

4.468

GRAVY (calculated)

-0.942

Length

360 amino acids

Sequence
(BLAST)

001: MEGFRRCYPL LDALESSNRS RLLLEPSLPS HPSPSARYRS CQWSSGVKRS PNLLRVEVKS GSPLRVDPGE EMLVHISLAA LGEKKNGGNE PVRLYMKVGD
101: QKLVIGTLSH DKVPQLCTEI VVERSFELSH SWKDGSVYFS GYRVDAHDSD SYPYRLAFDN LFMNMLLGLA VFDILDSLSD DDEPAVAKSG VKQVNFQLPN
201: DDAKAEEDSE EDDSDDDEDD DDSEDEEEEK KVTAEVEEDD DDEDSSDDEE DDSADEETPE KKVEEAKKRP AEATTSKTAS NKKAKFVTPQ KSESKKPHVH
301: VATPHPSKGG KSSGSNGESS KQQQQTPKSA NAFGCSSCNR TFTSEMGLQS HTKAKHSAAA

Best Arabidopsis Sequence Match ( AT5G03740.1 )
(BLAST)

001: MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA

Arabidopsis Description

HDT3HDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UP12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.