Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009513.1-P | Field mustard | nucleus, plastid | 79.08 | 43.06 |
| CDY10359 | Canola | nucleus | 77.55 | 42.7 |
| AT5G03740.1 | Thale cress | nucleus | 51.02 | 34.01 |
| PGSC0003DMT400006927 | Potato | nucleus | 34.18 | 24.91 |
| VIT_08s0007g03940.t01 | Wine grape | nucleus | 37.76 | 24.83 |
| PGSC0003DMT400021644 | Potato | nucleus | 36.22 | 24.74 |
| Solyc09g009030.2.1 | Tomato | nucleus | 33.67 | 24.54 |
| KRH67840 | Soybean | nucleus | 35.71 | 24.31 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 38.27 | 23.81 |
| Solyc10g085560.1.1 | Tomato | nucleus | 37.24 | 23.78 |
| CDX88790 | Canola | nucleus | 32.65 | 23.27 |
| KRG96126 | Soybean | nucleus | 34.69 | 23.21 |
| CDY26948 | Canola | nucleus | 30.1 | 22.69 |
| CDY35706 | Canola | nucleus | 33.67 | 22.0 |
| CDX71005 | Canola | nucleus | 28.57 | 20.36 |
| CDX92341 | Canola | nucleus | 26.53 | 19.92 |
| CDY09158 | Canola | plastid | 33.67 | 18.97 |
| GSMUA_Achr10P... | Banana | plastid | 32.65 | 17.11 |
| CDY30525 | Canola | cytosol, nucleus, plastid | 14.29 | 12.73 |
| CDX77140 | Canola | nucleus | 12.24 | 11.16 |
| CDY59279 | Canola | cytosol | 9.18 | 11.11 |
| CDY09153 | Canola | cytosol | 9.69 | 10.92 |
| CDY09155 | Canola | cytosol | 8.16 | 8.7 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 4.59 | 7.96 |
| CDY59274 | Canola | plastid | 15.31 | 6.98 |
Protein Annotations
| EnsemblPlants:CDX70287 | EnsemblPlantsGene:GSBRNA2T00136435001 | Gene3D:3.30.160.60 | GO:A0A078C0J0 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | PFscan:PS50157 |
| ProteinID:CDX70287 | ProteinID:CDX70287.1 | ScanProsite:PS00028 | SEG:seg | UniParc:UPI0004EF11FD | MapMan:35.1 |
Description
BnaA10g26360D
Coordinates
chrLK031790:-:3944628..3946015
Molecular Weight (calculated)
21197.2 Da
IEP (calculated)
4.069
GRAVY (calculated)
-1.347
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLGLAVFDI LDSLSDDDEP AVAKSGVKQV NFQLPNDDAK AEEDSEEDDS DDDEDDDDSE DEEEEKKVTA EVEEDDDDED SSDDEEDDSA DEETPEKKVE
101: EAKKRPAEAT TSKTASNKKA KFVTPQKSES KKPHVHVATP HPSKGGKSSG SNGESSKQQQ QTPKSANAFG CSSCNRTFTS EMGLQSHTKA KHSAAA
101: EAKKRPAEAT TSKTASNKKA KFVTPQKSES KKPHVHVATP HPSKGGKSSG SNGESSKQQQ QTPKSANAFG CSSCNRTFTS EMGLQSHTKA KHSAAA
001: MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA
Arabidopsis Description
HDT3HDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UP12]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.