Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09158 | Canola | plastid | 76.67 | 66.09 |
| CDX71005 | Canola | nucleus | 56.33 | 61.45 |
| CDY26948 | Canola | nucleus | 51.33 | 59.23 |
| CDX92341 | Canola | nucleus | 50.67 | 58.24 |
| CDX88790 | Canola | nucleus | 52.33 | 57.09 |
| AT5G22650.1 | Thale cress | nucleus | 58.0 | 56.86 |
| CDY09155 | Canola | cytosol | 30.67 | 50.0 |
| CDY59279 | Canola | cytosol | 27.0 | 50.0 |
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 17.33 | 44.44 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 16.67 | 44.25 |
| CDY09153 | Canola | cytosol | 23.67 | 40.8 |
| Solyc11g066840.1.1 | Tomato | nucleus | 41.33 | 39.12 |
| PGSC0003DMT400005672 | Potato | nucleus | 37.67 | 38.97 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 44.67 | 37.96 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 14.0 | 37.5 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 38.0 | 36.19 |
| CDX70287 | Canola | nucleus | 22.0 | 33.67 |
| CDX77140 | Canola | nucleus | 24.0 | 33.49 |
| PGSC0003DMT400068253 | Potato | cytosol | 38.0 | 32.02 |
| CDY30525 | Canola | cytosol, nucleus, plastid | 23.33 | 31.82 |
| CDY10359 | Canola | nucleus | 36.0 | 30.34 |
| GSMUA_Achr10P... | Banana | plastid | 37.33 | 29.95 |
| CDY59274 | Canola | plastid | 22.67 | 15.81 |
Protein Annotations
| EnsemblPlants:CDY35706 | EnsemblPlantsGene:GSBRNA2T00059120001 | Gene3D:2.60.120.340 | ncoils:Coil | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 |
| ProteinID:CDY35706 | ProteinID:CDY35706.1 | SEG:seg | UniParc:UPI0004EEEC48 | UniProt:A0A078HDB7 | MapMan:12.3.2.2 |
Description
BnaC02g09720DBnaC02g09720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDB7]
Coordinates
chrLK032358:+:292978..294839
Molecular Weight (calculated)
31941.0 Da
IEP (calculated)
4.419
GRAVY (calculated)
-1.160
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGVEVKA GKPLKVKPDE DCLIHLSQAS LDKGKKGETA VLYVTVDGKK LVIGTLVQDT IPQISFDLVF EKEFELSHSS KGSVHFIGYK SPNIDEEEDF
101: PSDSEEEEEE VEVPATSTVT TNGAAPTSSV VTADSKPKAA AKAKPAEVKP ESDEDDDESD EEDDSEDDGS DSEKGVSDEE DDSEDEEDDS EEEEEDTPKK
201: PETSNKKRPI ESATPVSAKK AKPAVAATPQ KSEEKKKGGH TATPHPAKKG GKSPMNANQS PKSGGQSSGS GGNKKPFNNS GKQFGSNNKG NKGKGKGSRA
101: PSDSEEEEEE VEVPATSTVT TNGAAPTSSV VTADSKPKAA AKAKPAEVKP ESDEDDDESD EEDDSEDDGS DSEKGVSDEE DDSEDEEDDS EEEEEDTPKK
201: PETSNKKRPI ESATPVSAKK AKPAVAATPQ KSEEKKKGGH TATPHPAKKG GKSPMNANQS PKSGGQSSGS GGNKKPFNNS GKQFGSNNKG NKGKGKGSRA
001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA
Arabidopsis Description
HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.