Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88790 | Canola | nucleus | 74.91 | 74.91 |
| CDY35706 | Canola | nucleus | 61.45 | 56.33 |
| AT5G22650.1 | Thale cress | nucleus | 58.18 | 52.29 |
| CDY26948 | Canola | nucleus | 48.73 | 51.54 |
| CDY09155 | Canola | cytosol | 33.45 | 50.0 |
| CDX92341 | Canola | nucleus | 47.27 | 49.81 |
| CDY59279 | Canola | cytosol | 28.36 | 48.15 |
| CDY09158 | Canola | plastid | 60.36 | 47.7 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 18.91 | 46.02 |
| CDY09153 | Canola | cytosol | 25.09 | 39.66 |
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 16.0 | 37.61 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 41.82 | 36.51 |
| PGSC0003DMT400005672 | Potato | nucleus | 37.82 | 35.86 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 43.27 | 33.71 |
| Solyc11g066840.1.1 | Tomato | nucleus | 37.82 | 32.81 |
| CDX77140 | Canola | nucleus | 24.36 | 31.16 |
| PGSC0003DMT400068253 | Potato | cytosol | 39.64 | 30.62 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 12.36 | 30.36 |
| CDX70287 | Canola | nucleus | 20.36 | 28.57 |
| CDY30525 | Canola | cytosol, nucleus, plastid | 21.82 | 27.27 |
| GSMUA_Achr10P... | Banana | plastid | 35.64 | 26.2 |
| CDY10359 | Canola | nucleus | 33.45 | 25.84 |
| CDY59274 | Canola | plastid | 27.27 | 17.44 |
Protein Annotations
| EnsemblPlants:CDX71005 | EnsemblPlantsGene:GSBRNA2T00140939001 | Gene3D:2.60.120.340 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | ProteinID:CDX71005 |
| ProteinID:CDX71005.1 | SEG:seg | UniParc:UPI0004EF224A | MapMan:12.3.2.2 | : | : |
Description
BnaC03g10890D
Coordinates
chrLK031791:+:3176327..3177870
Molecular Weight (calculated)
29575.6 Da
IEP (calculated)
4.426
GRAVY (calculated)
-1.081
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGVEVLA GKSVKVKPDF ETFIHVSQAS LDKGKKGETA LLYVTVDKKK LVLGTLSQGN IPQISFDLVF EKEFELSHSL ESGSVHFVGY KSPNMMEEEE
101: DFSDSEEEEE EAAVPAAVAT NGGSNVVVKA DSRPKVTLVE AKPESDEEDD DDESDEEGDS EEDESDSERG MDVDEDDSED DSEEEETPKK PEVSNKKRPN
201: ESASKTPISA KKAKPATPHP AKKGGKSPMN ANQSPKSGGQ SSSGGASNKK QFNSGKQFGP NNNKGKGKGK GKGKA
101: DFSDSEEEEE EAAVPAAVAT NGGSNVVVKA DSRPKVTLVE AKPESDEEDD DDESDEEGDS EEDESDSERG MDVDEDDSED DSEEEETPKK PEVSNKKRPN
201: ESASKTPISA KKAKPATPHP AKKGGKSPMN ANQSPKSGGQ SSSGGASNKK QFNSGKQFGP NNNKGKGKGK GKGKA
001: MEFWGIEVKS GKPVTVTPEE GILIHVSQAS LGECKNKKGE FVPLHVKVGN QNLVLGTLST ENIPQLFCDL VFDKEFELSH TWGKGSVYFV GYKTPNIEPQ
101: GYSEEEEEEE EEVPAGNAAK AVAKPKAKPA EVKPAVDDEE DESDSDGMDE DDSDGEDSEE EEPTPKKPAS SKKRANETTP KAPVSAKKAK VAVTPQKTDE
201: KKKGGKAANQ SPKSASQVSC GSCKKTFNSG NALESHNKAK HAAAK
101: GYSEEEEEEE EEVPAGNAAK AVAKPKAKPA EVKPAVDDEE DESDSDGMDE DDSDGEDSEE EEPTPKKPAS SKKRANETTP KAPVSAKKAK VAVTPQKTDE
201: KKKGGKAANQ SPKSASQVSC GSCKKTFNSG NALESHNKAK HAAAK
Arabidopsis Description
HDT1Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.