CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70287	Canola	nucleus	42.7	77.55
Bra009513.1-P	Field mustard	nucleus, plastid	73.88	73.06
AT5G03740.1	Thale cress	nucleus	43.26	52.38
VIT_08s0007g03940.t01	Wine grape	nucleus	35.96	42.95
PGSC0003DMT400021644	Potato	nucleus	32.3	40.07
PGSC0003DMT400006927	Potato	nucleus	30.06	39.78
KRH67840	Soybean	nucleus	31.74	39.24
Solyc09g009030.2.1	Tomato	nucleus	29.49	39.03
GSMUA_Achr8P07580_001	Banana	cytosol	12.36	38.94
GSMUA_Achr3P22840_001	Banana	nucleus	33.71	38.1
KRG96126	Soybean	nucleus	31.18	37.88
Solyc10g085560.1.1	Tomato	nucleus	32.3	37.46
CDY26948	Canola	nucleus	26.97	36.92
CDX88790	Canola	nucleus	28.09	36.36
CDY35706	Canola	nucleus	30.34	36.0
CDY09158	Canola	plastid	33.15	33.91
CDX71005	Canola	nucleus	25.84	33.45
CDX92341	Canola	nucleus	24.44	33.33
CDY59279	Canola	cytosol	14.33	31.48
GSMUA_Achr10P...	Banana	plastid	30.62	29.14
CDY09155	Canola	cytosol	14.61	28.26
CDY30525	Canola	cytosol, nucleus, plastid	16.85	27.27
CDY09153	Canola	cytosol	13.2	27.01
CDX77140	Canola	nucleus	15.45	25.58
CDY59274	Canola	plastid	18.26	15.12

Protein Annotations

EnsemblPlants:CDY10359	EnsemblPlantsGene:GSBRNA2T00032259001	Gene3D:3.30.160.60	GO:A0A078FBI2	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31802	PANTHER:PTHR31802:SF8	PFscan:PS50157
ProteinID:CDY10359	ProteinID:CDY10359.1	ScanProsite:PS00028	SEG:seg	UniParc:UPI0004EDB933	UniProt:A0A078FBI2
MapMan:12.3.2.2	:	:	:	:	:

Description

BnaCnng02600DBnaCnng02600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBI2]

Coordinates

chrLK032003:-:25960..27981

Molecular Weight (calculated)

39244.9 Da

IEP (calculated)

4.505

GRAVY (calculated)

-0.935

Length

356 amino acids

Sequence
(BLAST)

001: MVKDPGSKRF RRGHLTRRPK SSNRSRLLLE PFSPVASVAV SSLPIVSMEF WGVEVKSGSP LRVDAEEEMI VHISLAALGE KKNGGNEPVR LYMKVGDQKL
101: VIGTLSHDKC PQLCTEIVLE RSFELSHSWK DGSVFFSGYR VDAHESDSYP YRCLTFDNLL MNMLLGLALL SDDDEPAEPA VTKSGVKQVN FQLPNDDAKA
201: EEDDEEDDSD DDEDDDDSED EEEEKKVTAE VEEDDDDEDS SDDEEDDSSD EETPEKKVEE AKKRPAEATT SKTASNKKAK FVTPQKSESK KPHVHVATPH
301: PSKGGKSSGS NGESSKQQQQ QTPKSANAFG CSSCNRTFTS EMGLQSHTKA KHSGVA

Best Arabidopsis Sequence Match ( AT5G03740.1 )
(BLAST)

001: MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA

Arabidopsis Description

HDT3HDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UP12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.