CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96126	Soybean	nucleus	76.39	75.09
PGSC0003DMT400021644	Potato	nucleus	51.04	51.22
GSMUA_Achr8P07580_001	Banana	cytosol	19.79	50.44
Solyc09g009030.2.1	Tomato	nucleus	45.83	49.07
PGSC0003DMT400006927	Potato	nucleus	45.49	48.7
HORVU3Hr1G092400.1	Barley	nucleus	10.76	48.44
Solyc10g085560.1.1	Tomato	nucleus	51.04	47.88
VIT_08s0007g03940.t01	Wine grape	nucleus	48.96	47.32
AT5G03740.1	Thale cress	nucleus	42.71	41.84
EES19871	Sorghum	nucleus	43.4	41.81
Os05t0597100-01	Rice	nucleus	42.71	41.41
TraesCS1D01G454400.2	Wheat	nucleus	43.4	40.19
Zm00001d038832_P002	Maize	nucleus	41.67	40.0
KRH22734	Soybean	nucleus	26.74	39.9
KRH30517	Soybean	nucleus	39.58	39.45
KRH26575	Soybean	nucleus	42.01	39.41
GSMUA_Achr3P22840_001	Banana	nucleus	42.71	39.05
EES20078	Sorghum	nucleus	41.32	38.76
TraesCS1A01G445700.4	Wheat	nucleus	40.97	38.19
HORVU1Hr1G095140.2	Barley	nucleus	20.14	38.16
Zm00001d012095_P001	Maize	cytosol, nucleus, plastid	20.14	37.91
EES04076	Sorghum	nucleus	36.46	37.91
KRH25160	Soybean	nucleus	38.54	37.12
Zm00001d012092_P001	Maize	nucleus	36.11	36.49
CDX70287	Canola	nucleus	24.31	35.71
Zm00001d042433_P001	Maize	nucleus	27.78	32.52
GSMUA_Achr10P...	Banana	plastid	42.01	32.35
Os01t0909150-00	Rice	cytosol	13.19	31.93
CDY10359	Canola	nucleus	39.24	31.74
Bra009513.1-P	Field mustard	nucleus, plastid	38.19	30.56
Zm00001d011139_P005	Maize	cytosol	29.86	27.65
TraesCS3B01G450400.1	Wheat	nucleus	35.76	27.25
KXG20698	Sorghum	nucleus	28.82	26.52
Zm00001d014548_P002	Maize	cytosol	17.36	26.04
KXG33961	Sorghum	nucleus	24.31	26.02
Os01t0909100-01	Rice	nucleus, peroxisome	21.53	25.41
TraesCS3D01G410300.2	Wheat	nucleus	29.51	23.35
Os01t0909500-02	Rice	cytosol	18.75	22.88
TraesCS3B01G450300.1	Wheat	nucleus	29.51	22.19
TraesCS3A01G415200.1	Wheat	nucleus	29.51	21.09
HORVU3Hr1G092390.4	Barley	nucleus, plastid	29.86	20.33
TraesCS3D01G410400.1	Wheat	nucleus	22.92	15.28

Protein Annotations

EMBL:ACUP02002083	EMBL:BT095167	EnsemblPlants:KRH67840	EnsemblPlantsGene:GLYMA_03G190700	EntrezGene:100812152	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31802	PANTHER:PTHR31802:SF8
PFscan:PS50157	ProteinID:KRH67840	ProteinID:KRH67840.1	ScanProsite:PS00028	SEG:seg	UniParc:UPI0001B15F6C
UniProt:C6TC87	MapMan:12.3.2.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:40130800..40135531

Molecular Weight (calculated)

31467.4 Da

IEP (calculated)

4.389

GRAVY (calculated)

-1.093

Length

288 amino acids

Sequence
(BLAST)

001: MEFWGVEVKS GESLKVDPGD DKIIHLSNAC LGDVTKDKEG LPVALYVKFG NQKLVLGTLS SEAFPQISYD LVFEKEFELS HNWKHGSVFF TGFKAQSQSE
101: SDNDEDSDDF DEDIPVSAAN GKPEIEVKNG IKPDANEAKQ KKIANGEDED SSESESDDDS SEDQLTANGD IESSEGDDDS DDEEEGDDES DEETPKKIEA
201: SNKRGIDSSK KTPVPVKKTK FVTPQKTDSK NVVHVATPHP SKQTGKATAN NKQQTPKSGG DYSCKPCNRS FKTEDALSSH NKAKHSTK

Best Arabidopsis Sequence Match ( AT5G03740.1 )
(BLAST)

001: MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA

Arabidopsis Description

HDT3HDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UP12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.