Factsheet for Os01t0909100-01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus

Predictor Summary:

nucleus 3
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22734	Soybean	nucleus	26.64	33.68
Zm00001d014548_P002	Maize	cytosol	25.0	31.77
KXG20698	Sorghum	nucleus	40.57	31.63
Os01t0909150-00	Rice	cytosol	14.75	30.25
Os01t0909500-02	Rice	cytosol	25.41	26.27
TraesCS3D01G410300.2	Wheat	nucleus	38.52	25.82
TraesCS3B01G450300.1	Wheat	nucleus	38.11	24.28
Os05t0597100-01	Rice	nucleus	29.51	24.24
HORVU3Hr1G092390.4	Barley	nucleus, plastid	40.98	23.64
KXG33961	Sorghum	nucleus	25.82	23.42
PGSC0003DMT400021644	Potato	nucleus	27.46	23.34
PGSC0003DMT400005672	Potato	nucleus	26.64	22.41
KRH26575	Soybean	nucleus	27.87	22.15
TraesCS3A01G415200.1	Wheat	nucleus	36.48	22.08
PGSC0003DMT400006927	Potato	nucleus	24.18	21.93
Solyc10g085560.1.1	Tomato	nucleus	27.46	21.82
KRH67840	Soybean	nucleus	25.41	21.53
KRH25160	Soybean	nucleus	26.23	21.4
Solyc09g009030.2.1	Tomato	nucleus	23.36	21.19
KRH30517	Soybean	nucleus	25.0	21.11
Solyc11g066840.1.1	Tomato	nucleus	27.05	20.82
VIT_08s0007g03940.t01	Wine grape	nucleus	25.0	20.47
KRG96126	Soybean	nucleus	22.54	18.77
VIT_06s0061g01240.t01	Wine grape	nucleus	26.64	18.41
PGSC0003DMT400068253	Potato	cytosol	26.64	18.26
GSMUA_Achr8P01440_001	Banana	extracellular	10.25	10.5
VIT_06s0009g03080.t01	Wine grape	nucleus	1.64	3.57
VIT_03s0132g00020.t01	Wine grape	nucleus	1.64	3.42

Protein Annotations

EnsemblPlants:Os01t0909100-01	EnsemblPlantsGene:Os01g0909100	Gene3D:2.60.120.340	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
PANTHER:PTHR31802	PANTHER:PTHR31802:SF7	ProteinID:BAS75819.1	SEG:seg	UniParc:UPI000393951C	UniProt:A0A0P0VBX6
MapMan:12.3.2.2	:	:	:	:	:

Description

HISTONE DEACETYLASE 2Hypothetical conserved gene. (Os01t0909100-01)

Coordinates

chr1:+:39588274..39591239

Molecular Weight (calculated)

26870.1 Da

IEP (calculated)

3.887

GRAVY (calculated)

-0.903

Length

244 amino acids

Sequence
(BLAST)

001: NPSRGARRGE ERRGKEGEAT GNAIAFVPPM ETTMGFWGVA VRPGETVMCD PPGEFYYHIS QIALEPGELN ENVQVFGEVD GKRILLGTLS VEHRPQLSID
101: LVFEKEFELL HTSKTYNIFF SGYQAADARR SDSPTEEGDE SDEEVPLAIP LFPNSDDDKI KEVQNSPSKF ATLKSAAAAS PTPEAIVEER KNYGKSEADD
201: DDSDEESDAS GEDEYDDDED MIDKQDSSDD DGDSSDEEET PSKV

Best Arabidopsis Sequence Match ( AT5G22650.1 )
(BLAST)

001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA

Arabidopsis Description

HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.