Factsheet for HORVU3Hr1G092390.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G410300.2	Wheat	nucleus	74.47	86.54
TraesCS3B01G450300.1	Wheat	nucleus	72.58	80.16
TraesCS3A01G415200.1	Wheat	nucleus	74.0	77.67
HORVU3Hr1G092400.1	Barley	nucleus	6.38	42.19
Os01t0909100-01	Rice	nucleus, peroxisome	23.64	40.98
KXG20698	Sorghum	nucleus	26.71	36.1
KXG33961	Sorghum	nucleus	21.51	33.83
VIT_03s0132g00020.t01	Wine grape	nucleus	8.75	31.62
Zm00001d014548_P002	Maize	cytosol	13.95	30.73
PGSC0003DMT400006927	Potato	nucleus	19.39	30.48
VIT_08s0007g03940.t01	Wine grape	nucleus	21.28	30.2
PGSC0003DMT400021644	Potato	nucleus	20.33	29.97
KRH67840	Soybean	nucleus	20.33	29.86
Solyc09g009030.2.1	Tomato	nucleus	18.68	29.37
KRH30517	Soybean	nucleus	19.39	28.37
Solyc10g085560.1.1	Tomato	nucleus	20.57	28.34
KRH26575	Soybean	nucleus	20.33	28.01
KRH25160	Soybean	nucleus	19.62	27.76
KRG96126	Soybean	nucleus	19.15	27.65
KRH22734	Soybean	nucleus	12.29	26.94
HORVU1Hr1G095140.2	Barley	nucleus	9.46	26.32
PGSC0003DMT400005672	Potato	nucleus	17.73	25.86
VIT_06s0061g01240.t01	Wine grape	nucleus	20.57	24.65
Solyc11g066840.1.1	Tomato	nucleus	17.73	23.66
VIT_06s0009g03080.t01	Wine grape	nucleus	5.91	22.32
Bra034373.1-P	Field mustard	nucleus	10.4	20.47
AT2G27840.3	Thale cress	cytosol	9.69	20.2
CDX77140	Canola	nucleus	10.17	20.0
PGSC0003DMT400068253	Potato	cytosol	16.78	19.94
GSMUA_Achr8P01440_001	Banana	extracellular	10.64	18.91
CDY30525	Canola	cytosol, nucleus, plastid	9.46	18.18

Protein Annotations

EnsemblPlants:HORVU3Hr1G092390.4	EnsemblPlantsGene:HORVU3Hr1G092390	Gene3D:2.60.120.340	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31802	PANTHER:PTHR31802:SF7	PFscan:PS50157	ScanProsite:PS00028
SEG:seg	UniParc:UPI000B47C636	UniProt:A0A287MA80	MapMan:12.3.2.2	:	:

Description

No Description!

Coordinates

chrchr3H:+:637927444..637930936

Molecular Weight (calculated)

45861.5 Da

IEP (calculated)

9.961

GRAVY (calculated)

-0.906

Length

423 amino acids

Sequence
(BLAST)

001: PHPSPRSTPP RGHPSARTLG KSRRRRGGSS RPPSLGKMTE NHRFWGVVVK PGETVKCDPG DSHYHISTIA LEAGKAEENV QVFVNTDDTR IMLGTLSVHN
101: HPHVLADLVF KKEFELLHSS MTSNISFTGY KFDIMKRSHS CTKQGDESDE EVPMAIPLDF NTDANKNNEI AHDANKLIAP RPADAPSSIP EATVEETNTP
201: GKQKADDKGK ANAQNPIDGA DNESSDQDVD YLRKKTKDDY NPMETPLNTP QGKRAKIATP TTGNKTGYVH VATPHPAAKQ ACKSVDHVHV VTPHPAVKQA
301: RKSGDRVHVV TPHPAAKQSH KSGDHVHVAT PHPAAKQARK SGDHFHVATP HPAAKQARKS GDHVHVATPH PAAKHARKTP ENSDDKSKQS AGHVCNSCNR
401: AFSSLKGLDD HSKMKHGVAS KVA

Best Arabidopsis Sequence Match ( AT5G22650.2 )
(BLAST)

001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA

Arabidopsis Description

HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.