Factsheet for Zm00001d014548_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20698	Sorghum	nucleus	46.35	28.43
Os01t0909100-01	Rice	nucleus, peroxisome	31.77	25.0
Zm00001d012095_P001	Maize	cytosol, nucleus, plastid	19.27	24.18
KRH22734	Soybean	nucleus	23.96	23.83
CDX77140	Canola	nucleus	22.92	20.47
Zm00001d042433_P001	Maize	nucleus	25.52	19.92
AT2G27840.3	Thale cress	cytosol	20.83	19.7
Bra034373.1-P	Field mustard	nucleus	21.88	19.53
Zm00001d038832_P002	Maize	nucleus	30.21	19.33
CDY30525	Canola	cytosol, nucleus, plastid	21.88	19.09
Zm00001d012092_P001	Maize	nucleus	26.56	17.89
KRH67840	Soybean	nucleus	26.04	17.36
TraesCS3D01G410300.2	Wheat	nucleus	32.81	17.31
KRG96126	Soybean	nucleus	26.04	17.06
TraesCS3B01G450300.1	Wheat	nucleus	33.85	16.97
PGSC0003DMT400021644	Potato	nucleus	25.0	16.72
Zm00001d011139_P005	Maize	cytosol	26.56	16.4
PGSC0003DMT400006927	Potato	nucleus	22.92	16.36
Solyc09g009030.2.1	Tomato	nucleus	22.92	16.36
KRH26575	Soybean	nucleus	26.04	16.29
KRH30517	Soybean	nucleus	23.96	15.92
VIT_08s0007g03940.t01	Wine grape	nucleus	24.48	15.77
KRH25160	Soybean	nucleus	23.96	15.38
TraesCS3A01G415200.1	Wheat	nucleus	31.77	15.14
Solyc10g085560.1.1	Tomato	nucleus	23.96	14.98
PGSC0003DMT400005672	Potato	nucleus	22.4	14.83
Solyc11g066840.1.1	Tomato	nucleus	23.96	14.51
HORVU3Hr1G092390.4	Barley	nucleus, plastid	30.73	13.95
VIT_06s0061g01240.t01	Wine grape	nucleus	24.48	13.31
PGSC0003DMT400068253	Potato	cytosol	23.44	12.64
VIT_03s0132g00020.t01	Wine grape	nucleus	4.69	7.69
GSMUA_Achr8P01440_001	Banana	extracellular	7.29	5.88
VIT_06s0009g03080.t01	Wine grape	nucleus	3.12	5.36

Protein Annotations

EnsemblPlants:Zm00001d014548_P002	EnsemblPlants:Zm00001d014548_T002	EnsemblPlantsGene:Zm00001d014548	PANTHER:PTHR31802	PANTHER:PTHR31802:SF7	ProteinID:AQK66498.1
UniParc:UPI0002217CA5	UniProt:A0A1D6GU33	MapMan:12.3.2.2	:	:	:

Description

Histone deacetylase HDT1

Coordinates

chr5:-:52712338..52713290

Molecular Weight (calculated)

21854.4 Da

IEP (calculated)

6.230

GRAVY (calculated)

-0.003

Length

192 amino acids

Sequence
(BLAST)

001: GVVVRPGATV KCDPGEFWCH VSQIALHDRK GNEEVRVFVK VDGKEFWIGK LSVDKYPQCK TSLVFEKEFE LLHTSKTSTI SALGYKCWHC KRKYPFILLC
101: SIFLEKPEHN FLFPNNFFLI YHIYDSVTST NEGNNLVLPV LDIPNVFLSL GINNMVIDVS NDESDEEVPQ AIPLFPKADG IYPCSMCILF KS

Best Arabidopsis Sequence Match ( AT5G03740.1 )
(BLAST)

001: MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA

Arabidopsis Description

HDT3HDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UP12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.