Factsheet for TraesCS3D01G410300.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G450300.1	Wheat	nucleus	90.11	85.64
TraesCS3A01G415200.1	Wheat	nucleus	89.29	80.65
HORVU3Hr1G092390.4	Barley	nucleus, plastid	86.54	74.47
Os01t0909100-01	Rice	nucleus, peroxisome	25.82	38.52
KXG20698	Sorghum	nucleus	31.32	36.42
KXG33961	Sorghum	nucleus	25.0	33.83
Zm00001d014548_P002	Maize	cytosol	17.31	32.81
PGSC0003DMT400021644	Potato	nucleus	24.45	31.01
VIT_03s0132g00020.t01	Wine grape	nucleus	9.62	29.91
Solyc09g009030.2.1	Tomato	nucleus	21.98	29.74
PGSC0003DMT400006927	Potato	nucleus	21.98	29.74
TraesCS1D01G454400.2	Wheat	nucleus	25.27	29.58
KRH67840	Soybean	nucleus	23.35	29.51
Solyc10g085560.1.1	Tomato	nucleus	24.73	29.32
KRH30517	Soybean	nucleus	23.08	29.07
VIT_08s0007g03940.t01	Wine grape	nucleus	23.63	28.86
KRH25160	Soybean	nucleus	23.08	28.09
KRH26575	Soybean	nucleus	23.63	28.01
KRG96126	Soybean	nucleus	22.25	27.65
VIT_06s0061g01240.t01	Wine grape	nucleus	24.73	25.5
KRH22734	Soybean	nucleus	13.46	25.39
PGSC0003DMT400005672	Potato	nucleus	18.41	23.1
GSMUA_Achr8P01440_001	Banana	extracellular	14.29	21.85
Solyc11g066840.1.1	Tomato	nucleus	18.68	21.45
VIT_06s0009g03080.t01	Wine grape	nucleus	6.59	21.43
AT2G27840.3	Thale cress	cytosol	11.54	20.69
CDX77140	Canola	nucleus	11.81	20.0
Bra034373.1-P	Field mustard	nucleus	11.54	19.53
PGSC0003DMT400068253	Potato	cytosol	17.03	17.42
CDY30525	Canola	cytosol, nucleus, plastid	10.44	17.27
TraesCS3D01G410400.1	Wheat	nucleus	17.03	14.35

Protein Annotations

EnsemblPlants:TraesCS3D01G410300.2	EnsemblPlantsGene:TraesCS3D01G410300	Gene3D:2.60.120.340	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31802	PANTHER:PTHR31802:SF7	PFAM:PF13912	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	MapMan:12.3.2.2	:	:	:

Description

No Description!

Coordinates

chr3D:+:523703852..523706803

Molecular Weight (calculated)

39410.8 Da

IEP (calculated)

9.074

GRAVY (calculated)

-0.902

Length

364 amino acids

Sequence
(BLAST)

001: MTENHRFWGV VVKPGETVKC DPGDSHYHIS TIALETGKAE ENVQVFVKID DTRIMLATLS VDNHPHVLAD LVFKREFELL HSSMTSNISF MGYKFDIIKR
101: SHSCTKQGAD SDEEVPLAIP LDFNTDGYKN NEATHGANNL IVPRPADAPS PIPKAKVEGT NSPGKRKGDD KDKTGTQNSS DGVDNESSDQ DVDYPRKKTK
201: DDYNPMETPL NTPQGKRAKI ATPTTGNRTG YVHVATPHPA AKQARKSGDH VHVATPHPAA KQAGKSGDHV HVATPHPAAK QAHKSGDHVH VATPHPAAKQ
301: ARKSGDHVHV ATPHPAAKHA RKTPENNDDK SKQSAGHVCN SCNRTFSSLK GLGDHSRAKH GDAK

Best Arabidopsis Sequence Match ( AT5G22650.1 )
(BLAST)

001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA

Arabidopsis Description

HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.