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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 nucleus: 21132161
endoplasmic reticulum: 23041469
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH25160 Soybean nucleus 77.51 74.92
KRH26575 Soybean nucleus 52.25 49.19
KRH22734 Soybean nucleus 29.76 44.56
HORVU3Hr1G092400.1 Barley nucleus 9.69 43.75
Os05t0597100-01 Rice nucleus 41.87 40.74
GSMUA_Achr8P07580_001 Banana cytosol 15.92 40.71
KRH67840 Soybean nucleus 39.45 39.58
Zm00001d038832_P002 Maize nucleus 40.48 39.0
EES19871 Sorghum nucleus 40.14 38.8
Os01t0909150-00 Rice cytosol 15.57 37.82
KRG96126 Soybean nucleus 38.06 37.54
EES20078 Sorghum nucleus 39.79 37.46
TraesCS1D01G454400.2 Wheat nucleus 40.14 37.3
GSMUA_Achr3P22840_001 Banana nucleus 40.14 36.83
Zm00001d012095_P001 Maize cytosol, nucleus, plastid 19.38 36.6
HORVU1Hr1G095140.2 Barley nucleus 19.03 36.18
EES04076 Sorghum nucleus 34.6 36.1
TraesCS1A01G445700.4 Wheat nucleus 37.72 35.28
Zm00001d012092_P001 Maize nucleus 32.87 33.33
KXG33961 Sorghum nucleus 28.72 30.86
Zm00001d042433_P001 Maize nucleus 25.26 29.67
GSMUA_Achr10P... Banana plastid 38.06 29.41
Zm00001d011139_P005 Maize cytosol 29.41 27.33
KXG20698 Sorghum nucleus 28.72 26.52
Os01t0909500-02 Rice cytosol 20.76 25.42
TraesCS3B01G450400.1 Wheat nucleus 33.22 25.4
Os01t0909100-01 Rice nucleus, peroxisome 21.11 25.0
Zm00001d014548_P002 Maize cytosol 15.92 23.96
TraesCS3D01G410300.2 Wheat nucleus 29.07 23.08
TraesCS3B01G450300.1 Wheat nucleus 30.1 22.72
TraesCS3A01G415200.1 Wheat nucleus 29.76 21.34
HORVU3Hr1G092390.4 Barley nucleus, plastid 28.37 19.39
TraesCS3D01G410400.1 Wheat nucleus 23.18 15.51
Protein Annotations
EntrezGene:100802220MapMan:12.3.2.2Gene3D:2.60.120.340Gene3D:3.30.160.60EMBL:ACUP02007029EnsemblPlantsGene:GLYMA_11G189500
GO:GO:0003674GO:GO:0003676GO:GO:0005488UniProt:I1LKW2InterPro:IPR013087EnsemblPlants:KRH30517
ProteinID:KRH30517ProteinID:KRH30517.1ScanProsite:PS00028PFscan:PS50157PANTHER:PTHR31802PANTHER:PTHR31802:SF8
UniParc:UPI00023CC7E4InterPro:Znf_C2H2_typeSEG:seg:::
Description
hypothetical protein
Coordinates
chr11:+:26160266..26163387
Molecular Weight (calculated)
30775.2 Da
IEP (calculated)
4.561
GRAVY (calculated)
-0.934
Length
289 amino acids
Sequence
(BLAST)
001: MDAPMEFWGV EVKVGQTVTV DPMDPVDSYI HISQVALGEA KKEKPNESVV LYLKVGEQKI VLGTLSRDGI PHLSLDLVLD SDSELSHTSK SASVFFCGYR
101: VLTGGNNASD FSDSEEDEEL ALEGQDNDEG AKVTKPSKPV PKIGAPAKTA DPKKDEGDDS DDESDDDLAG EDEFGSSDEM DDDSDSDEES DEETPAKKVD
201: QGKKRPNESA AKTPVSAKKA KTATPEKTNG KKNVHVATPH PSKKGGKTPN STKGQSPSSA GQLSCASCKK SFTNEVGLQQ HKKAKHGGQ
Best Arabidopsis Sequence Match ( AT5G03740.1 )
(BLAST)
001: MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA
Arabidopsis Description
HDT3HDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UP12]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.