Factsheet for GSMUA_Achr3P22840_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	endoplasmic reticulum
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P07580_001	Banana	cytosol	26.98	75.22
VIT_03s0132g00020.t01	Wine grape	nucleus	19.05	51.28
GSMUA_Achr10P...	Banana	plastid	58.73	49.47
PGSC0003DMT400021644	Potato	nucleus	44.44	48.78
PGSC0003DMT400006927	Potato	nucleus	40.0	46.84
Solyc09g009030.2.1	Tomato	nucleus	39.68	46.47
GSMUA_Achr8P01440_001	Banana	extracellular	34.29	45.38
Solyc10g085560.1.1	Tomato	nucleus	44.13	45.28
VIT_08s0007g03940.t01	Wine grape	nucleus	42.22	44.63
KRH26575	Soybean	nucleus	43.49	44.63
AT3G44750.1	Thale cress	nucleus	34.6	44.49
KRH67840	Soybean	nucleus	39.05	42.71
CDX71005	Canola	nucleus	36.51	41.82
KRG96126	Soybean	nucleus	38.73	41.64
VIT_06s0061g01240.t01	Wine grape	nucleus	45.71	40.79
VIT_06s0009g03080.t01	Wine grape	nucleus	14.29	40.18
KRH30517	Soybean	nucleus	36.83	40.14
CDY59279	Canola	cytosol	20.63	40.12
KRH22734	Soybean	nucleus	24.44	39.9
KRH25160	Soybean	nucleus	37.14	39.13
Bra006629.1-P	Field mustard	nucleus	33.65	38.83
Bra020209.1-P	Field mustard	nucleus	36.51	38.33
CDX70287	Canola	nucleus	23.81	38.27
CDY26948	Canola	nucleus	31.43	38.08
CDY35706	Canola	nucleus	36.19	38.0
Bra002425.1-P	Field mustard	nucleus	30.79	37.16
CDX92341	Canola	nucleus	30.79	37.16
CDX88790	Canola	nucleus	32.06	36.73
AT5G22650.1	Thale cress	nucleus	35.24	36.27
AT5G03740.1	Thale cress	nucleus	33.65	36.05
PGSC0003DMT400005672	Potato	nucleus	32.38	35.17
Solyc11g066840.1.1	Tomato	nucleus	34.29	34.07
CDY10359	Canola	nucleus	38.1	33.71
Bra020206.1-P	Field mustard	cytosol	19.37	33.15
CDY09155	Canola	cytosol	19.37	33.15
CDY09158	Canola	plastid	36.51	33.05
CDY09153	Canola	cytosol	17.78	32.18
Bra020204.1-P	Field mustard	cytosol	17.78	32.18
Bra009513.1-P	Field mustard	nucleus, plastid	36.51	31.94
PGSC0003DMT400068253	Potato	cytosol	32.38	28.65
CDY59274	Canola	plastid	19.37	14.19

Protein Annotations

EnsemblPlants:GSMUA_Achr3P22840_001	EnsemblPlants:GSMUA_Achr3T22840_001	EnsemblPlantsGene:GSMUA_Achr3G22840_001	Gene3D:2.60.120.340	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31802	PANTHER:PTHR31802:SF8	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	UniParc:UPI0002968180	UniProt:M0SH00	MapMan:12.3.2.2	:

Description

Histone deacetylase HDT2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G22840_001]

Coordinates

chr3:+:23703420..23708215

Molecular Weight (calculated)

34259.0 Da

IEP (calculated)

4.427

GRAVY (calculated)

-1.100

Length

315 amino acids

Sequence
(BLAST)

001: MEFWGLEVQP GKTVKVDPGE NKLLHLSQAS LGEVKDKGNE GVPVFVKFDN KKLVIGTLSA DKCAQIQYDL VFEKEFELSH GLKNTSIYFL GYKTVIQEEG
101: EYPFDIYTES ESDEEDIPLA QNINGKSEVK EEKPKPSAGK PNALKADASV AKSKPKMEVV KDEKRKADEN DDDDDDDESE EDDSDGDEDM LDEDDDSDDE
201: DADESSDEEE EATPKKVETG NKRPAGSALK TPAPEKKAKV ISPAGNKKTG ADGKKGSYVA TPYPAKQGKT PANSDKSKQQ TPKSAGSISC NSCSRTFNSD
301: NALQAHTKAK HSGGK

Best Arabidopsis Sequence Match ( AT5G22650.2 )
(BLAST)

001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA

Arabidopsis Description

HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.