Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09155 | Canola | cytosol | 100.0 | 100.0 |
| Bra020204.1-P | Field mustard | cytosol | 38.59 | 40.8 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 22.83 | 37.17 |
| Bra006629.1-P | Field mustard | nucleus | 50.54 | 34.07 |
| Bra020209.1-P | Field mustard | nucleus | 51.09 | 31.33 |
| Bra002425.1-P | Field mustard | nucleus | 40.22 | 28.35 |
| Bra034373.1-P | Field mustard | nucleus | 28.26 | 24.19 |
| PGSC0003DMT400005672 | Potato | nucleus | 36.41 | 23.1 |
| AT5G22650.1 | Thale cress | nucleus | 38.04 | 22.88 |
| Solyc11g066840.1.1 | Tomato | nucleus | 36.96 | 21.45 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 33.15 | 19.37 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 35.33 | 18.41 |
| PGSC0003DMT400068253 | Potato | cytosol | 33.15 | 17.13 |
| GSMUA_Achr10P... | Banana | plastid | 31.52 | 15.51 |
| Bra009513.1-P | Field mustard | nucleus, plastid | 28.8 | 14.72 |
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 2.17 | 3.42 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Bra020206.1 | EnsemblPlants:Bra020206.1-P | EnsemblPlantsGene:Bra020206 | Gene3D:2.60.120.340 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 |
| SEG:seg | UniParc:UPI00025434AD | UniProt:M4DUL3 | MapMan:12.3.2.2 | : | : |
Description
AT5G22650 (E=8e-026) HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2 | HD2B (HISTONE DEACETYLASE 2B); histone deacetylase
Coordinates
chrA02:+:5565814..5566844
Molecular Weight (calculated)
19975.3 Da
IEP (calculated)
4.303
GRAVY (calculated)
-0.476
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGAEVKA GKPLKVKPDE DCVIHLSQVC IDNGKKGETA LLYVTVDGKR LVIGKLSQGS IPQISLDLIF DQEFELSHSL ETGSVHFTGY KSPNMDDQEC
101: YSSFDSSSEE EVEVPATDTA NGNAGAAASS VVKADSEPKA KPAEEVKHES DDDDDEGSES GCICFSSGWM IEMMRKMILG TKKK
101: YSSFDSSSEE EVEVPATDTA NGNAGAAASS VVKADSEPKA KPAEEVKHES DDDDDEGSES GCICFSSGWM IEMMRKMILG TKKK
001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA
Arabidopsis Description
HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.