Factsheet for GSMUA_Achr8P07580_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P22840_001	Banana	nucleus	75.22	26.98
CDY59279	Canola	cytosol	38.05	26.54
KRH22734	Soybean	nucleus	45.13	26.42
AT3G44750.1	Thale cress	nucleus	50.44	23.27
Bra020206.1-P	Field mustard	cytosol	37.17	22.83
CDY09155	Canola	cytosol	37.17	22.83
Bra020204.1-P	Field mustard	cytosol	31.86	20.69
CDY09153	Canola	cytosol	31.86	20.69
PGSC0003DMT400021644	Potato	nucleus	51.33	20.21
KRH67840	Soybean	nucleus	50.44	19.79
GSMUA_Achr10P...	Banana	plastid	63.72	19.25
Solyc09g009030.2.1	Tomato	nucleus	45.13	18.96
PGSC0003DMT400006927	Potato	nucleus	45.13	18.96
CDX71005	Canola	nucleus	46.02	18.91
VIT_08s0007g03940.t01	Wine grape	nucleus	49.56	18.79
Bra006629.1-P	Field mustard	nucleus	45.13	18.68
CDX88790	Canola	nucleus	45.13	18.55
KRG96126	Soybean	nucleus	47.79	18.43
Solyc10g085560.1.1	Tomato	nucleus	49.56	18.24
KRH26575	Soybean	nucleus	48.67	17.92
PGSC0003DMT400005672	Potato	nucleus	44.25	17.24
CDY35706	Canola	nucleus	44.25	16.67
Bra020209.1-P	Field mustard	nucleus	44.25	16.67
CDY26948	Canola	nucleus	38.05	16.54
KRH25160	Soybean	nucleus	43.36	16.39
Solyc11g066840.1.1	Tomato	nucleus	45.13	16.09
KRH30517	Soybean	nucleus	40.71	15.92
VIT_06s0061g01240.t01	Wine grape	nucleus	49.56	15.86
CDX92341	Canola	nucleus	35.4	15.33
Bra002425.1-P	Field mustard	nucleus	35.4	15.33
AT5G22650.1	Thale cress	nucleus	38.94	14.38
CDY09158	Canola	plastid	44.25	14.37
PGSC0003DMT400068253	Potato	cytosol	40.71	12.92
AT5G03740.1	Thale cress	nucleus	32.74	12.59
CDY10359	Canola	nucleus	38.94	12.36
Bra009513.1-P	Field mustard	nucleus, plastid	37.17	11.67
CDY59274	Canola	plastid	30.97	8.14
GSMUA_Achr8P01440_001	Banana	extracellular	10.62	5.04
CDX70287	Canola	nucleus	7.96	4.59
VIT_03s0132g00020.t01	Wine grape	nucleus	2.65	2.56
VIT_06s0009g03080.t01	Wine grape	nucleus	0.88	0.89

Protein Annotations

EnsemblPlants:GSMUA_Achr8P07580_001	EnsemblPlants:GSMUA_Achr8T07580_001	EnsemblPlantsGene:GSMUA_Achr8G07580_001	Gene3D:2.60.120.340	PANTHER:PTHR31802	PANTHER:PTHR31802:SF8
UniParc:UPI0002959090	UniProt:M0TNG1	MapMan:12.3.2.2	:	:	:

Description

Histone deacetylase HDT1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G07580_001]

Coordinates

chr8:-:5062085..5063930

Molecular Weight (calculated)

12879.3 Da

IEP (calculated)

5.137

GRAVY (calculated)

-0.336

Length

113 amino acids

Sequence
(BLAST)

001: MEFWGLEVQP GKTVKVNPGE NKYLHLSQAS LGEIKDKGND RVPIFVKFDN RKLVLGTLSA GNCAQIQYDL LFEKEFELSH GSKNTSIYFV GYKTEAQGDY
101: DLYPFDICYQ IIC

Best Arabidopsis Sequence Match ( AT3G44750.2 )
(BLAST)

001: MEFWGIEVKS GKPVTVTPEE GILIHVSQAS LGECKNKKGE FVPLHVKVGN QNLVLGTLST ENIPQLFCDL VFDKEFELSH TWGKGSVYFV GYKTPNIEPQ
101: GYSEEEEEEV PAGNAAKAVA KPKAKPAEVK PAVDDEEDES DSDGMDEDDS DGEDSEEEEP TPKKPASSKK RANETTPKAP VSAKKAKVAV TPQKTDEKKK
201: GGKAANQSPK SASQVSCGSC KKTFNSGNAL ESHNKAKHAA AK

Arabidopsis Description

HDT1Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.