Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92341 | Canola | nucleus | 69.62 | 69.35 |
| CDY35706 | Canola | nucleus | 59.23 | 51.33 |
| CDX88790 | Canola | nucleus | 53.08 | 50.18 |
| CDY09155 | Canola | cytosol | 35.0 | 49.46 |
| CDX71005 | Canola | nucleus | 51.54 | 48.73 |
| CDY09158 | Canola | plastid | 60.0 | 44.83 |
| AT5G22650.1 | Thale cress | nucleus | 50.77 | 43.14 |
| CDY59279 | Canola | cytosol | 26.54 | 42.59 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 16.54 | 38.05 |
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 16.15 | 35.9 |
| CDY09153 | Canola | cytosol | 23.46 | 35.06 |
| Solyc11g066840.1.1 | Tomato | nucleus | 42.69 | 35.02 |
| PGSC0003DMT400005672 | Potato | nucleus | 38.08 | 34.14 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 13.85 | 32.14 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 43.46 | 32.01 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 38.08 | 31.43 |
| CDX70287 | Canola | nucleus | 22.69 | 30.1 |
| CDX77140 | Canola | nucleus | 24.62 | 29.77 |
| PGSC0003DMT400068253 | Potato | cytosol | 39.62 | 28.93 |
| CDY30525 | Canola | cytosol, nucleus, plastid | 23.08 | 27.27 |
| CDY10359 | Canola | nucleus | 36.92 | 26.97 |
| GSMUA_Achr10P... | Banana | plastid | 38.08 | 26.47 |
| CDY59274 | Canola | plastid | 23.08 | 13.95 |
Protein Annotations
| EnsemblPlants:CDY26948 | EnsemblPlantsGene:GSBRNA2T00036697001 | Gene3D:2.60.120.340 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | ProteinID:CDY26948 |
| ProteinID:CDY26948.1 | SEG:seg | UniParc:UPI0004EECB18 | UniProt:A0A078GQM5 | MapMan:12.3.2.2 | : |
Description
BnaC09g36350DBnaC09g36350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQM5]
Coordinates
chrLK032197:+:229647..231492
Molecular Weight (calculated)
28029.1 Da
IEP (calculated)
4.732
GRAVY (calculated)
-1.080
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGAEVKA GMPLKVRPQV DHLIHLSQAT IDGAKKGESG LLYVNIDWNK YVIGTLSQDH IPQISFDLVF EQEFELSHSL SQGSVHFVGY KSPNIDQEDY
101: PSDSEEEEVL AVPATSNVVK ADSKPKAKPA EVKPESDEDE DDESEEDEDD SEDDGPDPEK VMEVEDSEEE ETPKQPAPSN KRTATASVSK TPVPAKKTKT
201: AVAATPQKTE EKKKGGHAAT PHPAKKGGKN ANQNPKSGGQ SSGGNNKQGN KGKGKGKGRA
101: PSDSEEEEVL AVPATSNVVK ADSKPKAKPA EVKPESDEDE DDESEEDEDD SEDDGPDPEK VMEVEDSEEE ETPKQPAPSN KRTATASVSK TPVPAKKTKT
201: AVAATPQKTE EKKKGGHAAT PHPAKKGGKN ANQNPKSGGQ SSGGNNKQGN KGKGKGKGRA
001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA
Arabidopsis Description
HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.