CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020209.1-P	Field mustard	nucleus	86.21	100.0
CDY35706	Canola	nucleus	66.09	76.67
CDX88790	Canola	nucleus	49.71	62.91
CDX71005	Canola	nucleus	47.7	60.36
CDY26948	Canola	nucleus	44.83	60.0
CDX92341	Canola	nucleus	41.38	55.17
AT5G22650.1	Thale cress	nucleus	46.84	53.27
CDY59279	Canola	cytosol	24.14	51.85
CDY09155	Canola	cytosol	27.01	51.09
GSMUA_Achr8P07580_001	Banana	cytosol	14.37	44.25
VIT_03s0132g00020.t01	Wine grape	nucleus	14.37	42.73
CDY09153	Canola	cytosol	21.26	42.53
PGSC0003DMT400005672	Potato	nucleus	33.05	39.66
VIT_06s0061g01240.t01	Wine grape	nucleus	38.51	37.96
Solyc11g066840.1.1	Tomato	nucleus	34.2	37.54
GSMUA_Achr3P22840_001	Banana	nucleus	33.05	36.51
VIT_06s0009g03080.t01	Wine grape	nucleus	11.49	35.71
PGSC0003DMT400068253	Potato	cytosol	36.49	35.67
CDX70287	Canola	nucleus	18.97	33.67
CDY30525	Canola	cytosol, nucleus, plastid	21.26	33.64
CDX77140	Canola	nucleus	20.69	33.49
CDY10359	Canola	nucleus	33.91	33.15
GSMUA_Achr10P...	Banana	plastid	32.76	30.48
CDY59274	Canola	plastid	22.13	17.91

Protein Annotations

EnsemblPlants:CDY09158	EnsemblPlantsGene:GSBRNA2T00001389001	Gene3D:2.60.120.340	PANTHER:PTHR31802	PANTHER:PTHR31802:SF8	ProteinID:CDY09158
ProteinID:CDY09158.1	SEG:seg	UniParc:UPI0004EE52C8	UniProt:A0A078FBB6	MapMan:12.3.2.2	:

Description

BnaA02g05840DBnaA02g05840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBB6]

Coordinates

chrLK031993:+:393948..396765

Molecular Weight (calculated)

36907.2 Da

IEP (calculated)

4.493

GRAVY (calculated)

-0.958

Length

348 amino acids

Sequence
(BLAST)

001: MPQVLPLIAA QTSASPGTRS TLALEYTCCP KTPSPPSLES LSSSFINKME FWGVEVKAGK PLKVKPDEDC LIHLSQASLD KGKKGEAALL YVTVDGKKLV
101: IGTLVQDTIP QISFDLVFEK EFELSHSSKG SVHFIGYKSP NIDEEEDFPS DSEEEEEEVE VPATSTVTTT NGAAPASSVV TVDSKPKAKA AAAAKPAEVK
201: PESDEDDDES DEEDDSEDDG SDSEKGMDVD EDDSEDEEDD SEEEEDTPKK PEPINKKRPI ESATPVSAKK AKPAATPQKT EEKKKGGHTA TPHPAKKGGK
301: SPMNANQSPK SGGQSSGSGG NKKPFNNSGK QFGSNNKGNK GKGGKGRA

Best Arabidopsis Sequence Match ( AT5G22650.1 )
(BLAST)

001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA

Arabidopsis Description

HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.