Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400005672 | Potato | nucleus | 69.09 | 75.52 |
| PGSC0003DMT400068253 | Potato | cytosol | 73.82 | 65.73 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 16.09 | 45.13 |
| CDY26948 | Canola | nucleus | 35.02 | 42.69 |
| CDY35706 | Canola | nucleus | 39.12 | 41.33 |
| Bra002425.1-P | Field mustard | nucleus | 33.75 | 41.0 |
| CDX92341 | Canola | nucleus | 33.44 | 40.61 |
| Bra006629.1-P | Field mustard | nucleus | 34.7 | 40.29 |
| Bra020209.1-P | Field mustard | nucleus | 37.54 | 39.67 |
| Os05t0597100-01 | Rice | nucleus | 36.91 | 39.39 |
| CDX88790 | Canola | nucleus | 34.07 | 39.27 |
| AT3G44750.1 | Thale cress | nucleus | 30.28 | 39.18 |
| EES19871 | Sorghum | nucleus | 36.28 | 38.46 |
| TraesCS1D01G454400.2 | Wheat | nucleus | 37.54 | 38.26 |
| CDX71005 | Canola | nucleus | 32.81 | 37.82 |
| CDY59279 | Canola | cytosol | 19.24 | 37.65 |
| CDY09155 | Canola | cytosol | 21.45 | 36.96 |
| Bra020206.1-P | Field mustard | cytosol | 21.45 | 36.96 |
| Solyc10g085560.1.1 | Tomato | nucleus | 35.65 | 36.81 |
| TraesCS1A01G445700.4 | Wheat | nucleus | 35.65 | 36.57 |
| EES20078 | Sorghum | nucleus | 35.02 | 36.16 |
| Zm00001d038832_P002 | Maize | nucleus | 33.75 | 35.67 |
| Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 17.03 | 35.29 |
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 12.93 | 35.04 |
| Solyc09g009030.2.1 | Tomato | nucleus | 29.65 | 34.94 |
| AT5G22650.1 | Thale cress | nucleus | 33.12 | 34.31 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 34.07 | 34.29 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 38.17 | 34.28 |
| CDY09158 | Canola | plastid | 37.54 | 34.2 |
| EES04076 | Sorghum | nucleus | 29.65 | 33.94 |
| Os01t0909150-00 | Rice | cytosol | 11.99 | 31.93 |
| Zm00001d012092_P001 | Maize | nucleus | 28.39 | 31.58 |
| Zm00001d011139_P005 | Maize | cytosol | 30.91 | 31.51 |
| Zm00001d042433_P001 | Maize | nucleus | 24.29 | 31.3 |
| Bra020204.1-P | Field mustard | cytosol | 17.03 | 31.03 |
| CDY09153 | Canola | cytosol | 17.03 | 31.03 |
| HORVU1Hr1G095140.2 | Barley | nucleus | 14.51 | 30.26 |
| HORVU3Hr1G092400.1 | Barley | nucleus | 5.68 | 28.12 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 9.78 | 27.68 |
| GSMUA_Achr10P... | Banana | plastid | 32.49 | 27.54 |
| Os01t0909100-01 | Rice | nucleus, peroxisome | 20.82 | 27.05 |
| KXG33961 | Sorghum | nucleus | 21.45 | 25.28 |
| KXG20698 | Sorghum | nucleus | 24.61 | 24.92 |
| TraesCS3B01G450400.1 | Wheat | nucleus | 28.71 | 24.07 |
| Zm00001d014548_P002 | Maize | cytosol | 14.51 | 23.96 |
| Os01t0909500-02 | Rice | cytosol | 17.35 | 23.31 |
| TraesCS3B01G450300.1 | Wheat | nucleus | 22.71 | 18.8 |
| TraesCS3D01G410300.2 | Wheat | nucleus | 21.45 | 18.68 |
| HORVU3Hr1G092390.4 | Barley | nucleus, plastid | 23.66 | 17.73 |
| TraesCS3A01G415200.1 | Wheat | nucleus | 22.08 | 17.37 |
| TraesCS3D01G410400.1 | Wheat | nucleus | 21.14 | 15.51 |
| CDY59274 | Canola | plastid | 19.24 | 14.19 |
Protein Annotations
| EnsemblPlants:Solyc11g066840.1.1 | EnsemblPlantsGene:Solyc11g066840.1 | Gene3D:2.60.120.340 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | SEG:seg |
| UniParc:UPI000276A14F | UniProt:K4D9U1 | MapMan:12.3.2.2 | : | : | : |
Description
No Description!
Coordinates
chr11:-:52648990..52651300
Molecular Weight (calculated)
34467.1 Da
IEP (calculated)
4.333
GRAVY (calculated)
-1.171
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGVTSLS HELCIGVEVK AGQTLKVKPE LFKLIHISQA AIGEVKDVKE AKYVPLRLTV GDNKYVIGTL SAEDRPQLMF DLVFEKEFEL SHGWKNGSVH
101: FMGYSADDPS SEEIDSGDDV FSDEENVMEA LNGKLEADVK DVKPDAKKSA PAKDEKNAKV AESKKETESD EDDDDSEDDS DDEDDSEDDS DDVPLGMDGP
201: EGMDLSDDSE DDDDSEEDDD SEEETPKKVE QKKRPAPSPK VAPGSGKKAK QATPDNKSGG KKGPATPSAK QNGKPAFNGN NKPKTQSPKS GGQFSGNKSN
301: NKNFSGQKNF KGKQGRK
101: FMGYSADDPS SEEIDSGDDV FSDEENVMEA LNGKLEADVK DVKPDAKKSA PAKDEKNAKV AESKKETESD EDDDDSEDDS DDEDDSEDDS DDVPLGMDGP
201: EGMDLSDDSE DDDDSEEDDD SEEETPKKVE QKKRPAPSPK VAPGSGKKAK QATPDNKSGG KKGPATPSAK QNGKPAFNGN NKPKTQSPKS GGQFSGNKSN
301: NKNFSGQKNF KGKQGRK
001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA
Arabidopsis Description
HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.