Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 72.65 | 75.89 |
| HORVU3Hr1G092400.1 | Barley | nucleus | 25.64 | 46.88 |
| HORVU1Hr1G095140.2 | Barley | nucleus | 47.01 | 36.18 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 86.32 | 28.61 |
| EES19871 | Sorghum | nucleus | 53.85 | 21.07 |
| VIT_08s0007g03940.t01 | Wine grape | nucleus | 52.99 | 20.81 |
| AT3G44750.1 | Thale cress | nucleus | 42.73 | 20.41 |
| TraesCS1A01G445700.4 | Wheat | nucleus | 52.14 | 19.74 |
| TraesCS1D01G454400.2 | Wheat | nucleus | 51.28 | 19.29 |
| Os05t0597100-01 | Rice | nucleus | 48.72 | 19.19 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 51.28 | 19.05 |
| EES20078 | Sorghum | nucleus | 49.57 | 18.89 |
| Zm00001d038832_P002 | Maize | nucleus | 47.01 | 18.33 |
| CDY35706 | Canola | nucleus | 44.44 | 17.33 |
| Bra020209.1-P | Field mustard | nucleus | 42.73 | 16.67 |
| CDX92341 | Canola | nucleus | 36.75 | 16.48 |
| Bra002425.1-P | Field mustard | nucleus | 36.75 | 16.48 |
| CDY26948 | Canola | nucleus | 35.9 | 16.15 |
| GSMUA_Achr10P... | Banana | plastid | 51.28 | 16.04 |
| CDX71005 | Canola | nucleus | 37.61 | 16.0 |
| Bra006629.1-P | Field mustard | nucleus | 35.9 | 15.38 |
| CDX88790 | Canola | nucleus | 35.9 | 15.27 |
| AT5G22650.1 | Thale cress | nucleus | 39.32 | 15.03 |
| KXG33961 | Sorghum | nucleus | 34.19 | 14.87 |
| CDY09158 | Canola | plastid | 42.73 | 14.37 |
| Zm00001d012092_P001 | Maize | nucleus | 34.19 | 14.04 |
| PGSC0003DMT400005672 | Potato | nucleus | 34.19 | 13.79 |
| EES04076 | Sorghum | nucleus | 31.62 | 13.36 |
| Solyc11g066840.1.1 | Tomato | nucleus | 35.04 | 12.93 |
| KXG20698 | Sorghum | nucleus | 33.33 | 12.46 |
| TraesCS3B01G450400.1 | Wheat | nucleus | 40.17 | 12.43 |
| PGSC0003DMT400068253 | Potato | cytosol | 36.75 | 12.08 |
| Zm00001d042433_P001 | Maize | nucleus | 24.79 | 11.79 |
| Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 14.53 | 11.11 |
| TraesCS3D01G410300.2 | Wheat | nucleus | 29.91 | 9.62 |
| TraesCS3A01G415200.1 | Wheat | nucleus | 30.77 | 8.93 |
| TraesCS3B01G450300.1 | Wheat | nucleus | 29.06 | 8.88 |
| HORVU3Hr1G092390.4 | Barley | nucleus, plastid | 31.62 | 8.75 |
| Zm00001d011139_P005 | Maize | cytosol | 18.8 | 7.07 |
| CDY59279 | Canola | cytosol | 8.55 | 6.17 |
| Os01t0909500-02 | Rice | cytosol | 11.11 | 5.51 |
| Zm00001d014548_P002 | Maize | cytosol | 7.69 | 4.69 |
| CDY09153 | Canola | cytosol | 6.84 | 4.6 |
| Bra020204.1-P | Field mustard | cytosol | 6.84 | 4.6 |
| CDY59274 | Canola | plastid | 11.97 | 3.26 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 2.56 | 2.65 |
| CDY09155 | Canola | cytosol | 3.42 | 2.17 |
| Bra020206.1-P | Field mustard | cytosol | 3.42 | 2.17 |
| TraesCS3D01G410400.1 | Wheat | nucleus | 6.84 | 1.85 |
| Os01t0909150-00 | Rice | cytosol | 1.71 | 1.68 |
| Os01t0909100-01 | Rice | nucleus, peroxisome | 3.42 | 1.64 |
Protein Annotations
| Gene3D:3.30.160.60 | MapMan:35.2 | ProteinID:CCB52349 | ProteinID:CCB52349.1 | UniProt:F6HJF0 | EMBL:FN595773 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR013087 | PFAM:PF12171 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | SUPFAM:SSF57667 | UniParc:UPI00021087EE |
| ArrayExpress:VIT_03s0132g00020 | EnsemblPlantsGene:VIT_03s0132g00020 | EnsemblPlants:VIT_03s0132g00020.t01 | InterPro:Znf_C2H2_jaz | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:11323178..11325009
Molecular Weight (calculated)
12020.8 Da
IEP (calculated)
9.932
GRAVY (calculated)
-1.227
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDAEDGSDE GSESEEGTCI SSIQPGKKRP TESATKTPVP AKKAKLVSPQ NTDGKKGGAH TATPHPNKKA GKTPATGDKG KEQSPKSGGQ VSCKSCSKTF
101: NSENALQSHS KTKHGVS
101: NSENALQSHS KTKHGVS
001: MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA
Arabidopsis Description
HDT3HDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UP12]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.