Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09153 | Canola | cytosol | 100.0 | 100.0 |
| Bra020206.1-P | Field mustard | cytosol | 40.8 | 38.59 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 20.69 | 31.86 |
| Bra006629.1-P | Field mustard | nucleus | 40.23 | 25.64 |
| Bra002425.1-P | Field mustard | nucleus | 37.93 | 25.29 |
| Bra020209.1-P | Field mustard | nucleus | 42.53 | 24.67 |
| Bra034373.1-P | Field mustard | nucleus | 25.29 | 20.47 |
| AT5G22650.1 | Thale cress | nucleus | 33.91 | 19.28 |
| PGSC0003DMT400005672 | Potato | nucleus | 29.89 | 17.93 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 32.18 | 17.78 |
| Solyc11g066840.1.1 | Tomato | nucleus | 31.03 | 17.03 |
| PGSC0003DMT400068253 | Potato | cytosol | 32.18 | 15.73 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 30.46 | 15.01 |
| Bra009513.1-P | Field mustard | nucleus, plastid | 29.31 | 14.17 |
| GSMUA_Achr10P... | Banana | plastid | 29.31 | 13.64 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 4.6 | 7.14 |
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 4.6 | 6.84 |
Protein Annotations
| EnsemblPlants:Bra020204.1 | EnsemblPlants:Bra020204.1-P | EnsemblPlantsGene:Bra020204 | Gene3D:2.60.120.340 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 |
| SEG:seg | UniParc:UPI00025434AB | UniProt:M4DUL1 | MapMan:12.3.2.2 | : | : |
Description
AT5G22650 (E=1e-018) HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2 | HD2B (HISTONE DEACETYLASE 2B); histone deacetylase
Coordinates
chrA02:+:5555265..5556304
Molecular Weight (calculated)
18989.7 Da
IEP (calculated)
3.982
GRAVY (calculated)
-0.456
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSRTYDYVV LNACLLRARV EAGTPLKVKP DEDYLIHLSR ACIINGKEGE TALLDVTVDG KKFVIGYLSQ EKIPQINLDL IFEKEFELSH SLERGSVDFT
101: GYQTPDGDED DDSSSSEDYY TSSDSEEEGE VMVHSTITAN GSAGASASSV ARPAEGASVF TLRMDVDEDD SADD
101: GYQTPDGDED DDSSSSEDYY TSSDSEEEGE VMVHSTITAN GSAGASASSV ARPAEGASVF TLRMDVDEDD SADD
001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA
Arabidopsis Description
HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.