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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX88790 Canola nucleus 87.18 86.55
Bra020209.1-P Field mustard nucleus 67.03 61.0
Bra020206.1-P Field mustard cytosol 34.07 50.54
Bra002425.1-P Field mustard nucleus 46.15 48.28
AT5G22650.1 Thale cress nucleus 51.28 45.75
GSMUA_Achr8P07580_001 Banana cytosol 18.68 45.13
Bra020204.1-P Field mustard cytosol 25.64 40.23
PGSC0003DMT400005672 Potato nucleus 38.46 36.21
VIT_03s0132g00020.t01 Wine grape nucleus 15.38 35.9
Solyc11g066840.1.1 Tomato nucleus 40.29 34.7
VIT_06s0061g01240.t01 Wine grape nucleus 44.32 34.28
GSMUA_Achr3P22840_001 Banana nucleus 38.83 33.65
PGSC0003DMT400068253 Potato cytosol 41.03 31.46
VIT_06s0009g03080.t01 Wine grape nucleus 12.45 30.36
Bra034373.1-P Field mustard nucleus 23.44 29.77
Bra009513.1-P Field mustard nucleus, plastid 35.53 26.94
GSMUA_Achr10P... Banana plastid 35.53 25.94
Protein Annotations
EnsemblPlants:Bra006629.1EnsemblPlants:Bra006629.1-PEnsemblPlantsGene:Bra006629Gene3D:2.60.120.340PANTHER:PTHR31802PANTHER:PTHR31802:SF8
SEG:segUniParc:UPI0002540141UniProt:M4CQY8MapMan:12.3.2.2::
Description
AT5G22650 (E=2e-028) HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2 | HD2B (HISTONE DEACETYLASE 2B); histone deacetylase
Coordinates
chrA03:+:4353992..4355262
Molecular Weight (calculated)
29373.3 Da
IEP (calculated)
4.359
GRAVY (calculated)
-1.118
Length
273 amino acids
Sequence
(BLAST)
001: MEFWGVEVLA GKSVKVKPDF ETLIHVSQAS LDKGKKGETA LLYVTVDKKK LVLGTLSQGN IPQTSFDLVF EKEFELSHSL ESGSVHFVGY KSPNMMEEEE
101: DFSDSEEEEE EEAAVPAAVA ANGGSNVVVK ADSRPKVTLL EAKPESDEED DDESDEEDGS EEDGSDSEKG MDVDEDDSED EEEDDSEEEE TPKKKPEVSN
201: KKRPNESASK TPISAKKAKP ATPHPAKKGG KSPNQSPKSG GQSSGAGSNK KQFNSGKQFG SNNKGKGKGK GRA
Best Arabidopsis Sequence Match ( AT5G22650.2 )
(BLAST)
001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA
Arabidopsis Description
HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.