Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX88790 | Canola | nucleus | 87.18 | 86.55 |
Bra020209.1-P | Field mustard | nucleus | 67.03 | 61.0 |
Bra020206.1-P | Field mustard | cytosol | 34.07 | 50.54 |
Bra002425.1-P | Field mustard | nucleus | 46.15 | 48.28 |
AT5G22650.1 | Thale cress | nucleus | 51.28 | 45.75 |
GSMUA_Achr8P07580_001 | Banana | cytosol | 18.68 | 45.13 |
Bra020204.1-P | Field mustard | cytosol | 25.64 | 40.23 |
PGSC0003DMT400005672 | Potato | nucleus | 38.46 | 36.21 |
VIT_03s0132g00020.t01 | Wine grape | nucleus | 15.38 | 35.9 |
Solyc11g066840.1.1 | Tomato | nucleus | 40.29 | 34.7 |
VIT_06s0061g01240.t01 | Wine grape | nucleus | 44.32 | 34.28 |
GSMUA_Achr3P22840_001 | Banana | nucleus | 38.83 | 33.65 |
PGSC0003DMT400068253 | Potato | cytosol | 41.03 | 31.46 |
VIT_06s0009g03080.t01 | Wine grape | nucleus | 12.45 | 30.36 |
Bra034373.1-P | Field mustard | nucleus | 23.44 | 29.77 |
Bra009513.1-P | Field mustard | nucleus, plastid | 35.53 | 26.94 |
GSMUA_Achr10P... | Banana | plastid | 35.53 | 25.94 |
Protein Annotations
EnsemblPlants:Bra006629.1 | EnsemblPlants:Bra006629.1-P | EnsemblPlantsGene:Bra006629 | Gene3D:2.60.120.340 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 |
SEG:seg | UniParc:UPI0002540141 | UniProt:M4CQY8 | MapMan:12.3.2.2 | : | : |
Description
AT5G22650 (E=2e-028) HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2 | HD2B (HISTONE DEACETYLASE 2B); histone deacetylase
Coordinates
chrA03:+:4353992..4355262
Molecular Weight (calculated)
29373.3 Da
IEP (calculated)
4.359
GRAVY (calculated)
-1.118
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGVEVLA GKSVKVKPDF ETLIHVSQAS LDKGKKGETA LLYVTVDKKK LVLGTLSQGN IPQTSFDLVF EKEFELSHSL ESGSVHFVGY KSPNMMEEEE
101: DFSDSEEEEE EEAAVPAAVA ANGGSNVVVK ADSRPKVTLL EAKPESDEED DDESDEEDGS EEDGSDSEKG MDVDEDDSED EEEDDSEEEE TPKKKPEVSN
201: KKRPNESASK TPISAKKAKP ATPHPAKKGG KSPNQSPKSG GQSSGAGSNK KQFNSGKQFG SNNKGKGKGK GRA
101: DFSDSEEEEE EEAAVPAAVA ANGGSNVVVK ADSRPKVTLL EAKPESDEED DDESDEEDGS EEDGSDSEKG MDVDEDDSED EEEDDSEEEE TPKKKPEVSN
201: KKRPNESASK TPISAKKAKP ATPHPAKKGG KSPNQSPKSG GQSSGAGSNK KQFNSGKQFG SNNKGKGKGK GRA
001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA
Arabidopsis Description
HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.