Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006629.1-P | Field mustard | nucleus | 86.55 | 87.18 |
| CDX71005 | Canola | nucleus | 74.91 | 74.91 |
| CDY26948 | Canola | nucleus | 50.18 | 53.08 |
| CDY35706 | Canola | nucleus | 57.09 | 52.33 |
| CDY09155 | Canola | cytosol | 34.55 | 51.63 |
| CDY09158 | Canola | plastid | 62.91 | 49.71 |
| CDY59279 | Canola | cytosol | 28.73 | 48.77 |
| CDX92341 | Canola | nucleus | 45.45 | 47.89 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 18.55 | 45.13 |
| AT5G22650.1 | Thale cress | nucleus | 49.82 | 44.77 |
| CDY09153 | Canola | cytosol | 25.45 | 40.23 |
| PGSC0003DMT400005672 | Potato | nucleus | 38.18 | 36.21 |
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 15.27 | 35.9 |
| Solyc11g066840.1.1 | Tomato | nucleus | 39.27 | 34.07 |
| CDX70287 | Canola | nucleus | 23.27 | 32.65 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 41.82 | 32.58 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 36.73 | 32.06 |
| PGSC0003DMT400068253 | Potato | cytosol | 39.64 | 30.62 |
| CDX77140 | Canola | nucleus | 23.64 | 30.23 |
| CDY30525 | Canola | cytosol, nucleus, plastid | 24.0 | 30.0 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 12.0 | 29.46 |
| CDY10359 | Canola | nucleus | 36.36 | 28.09 |
| GSMUA_Achr10P... | Banana | plastid | 34.91 | 25.67 |
| CDY59274 | Canola | plastid | 26.55 | 16.98 |
Protein Annotations
| EnsemblPlants:CDX88790 | EnsemblPlantsGene:GSBRNA2T00148852001 | Gene3D:2.60.120.340 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | ProteinID:CDX88790 |
| ProteinID:CDX88790.1 | SEG:seg | UniParc:UPI0004EE4C18 | MapMan:12.3.2.2 | : | : |
Description
BnaA03g08590D
Coordinates
chrLK031856:-:952360..953862
Molecular Weight (calculated)
29497.4 Da
IEP (calculated)
4.344
GRAVY (calculated)
-1.079
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGVEVLA GKSVKVKPDF ETLIHVSQAS LDKGKKGETA LLYVTVDKKK LVLGTLSQGN IPQTSFDLVF EKEFELSHSL ESGSVHFVGY KSPNMMEEEE
101: DFSDSEEDEE EAAVPAVPAA VAANGGSNVV VKADSRPKVT LLEAKPESDE EDDDESDEED GSEEDGSDSE KGMDVDEDDS EDEEEDDTEE EETPKKKPEV
201: SNKKRPNESA SKTPISAKKA KPATPHPAKK GGKSPNQSPK SGGQSSGAGS NKKQFNSGKQ FGSNNKGKGK GNGRA
101: DFSDSEEDEE EAAVPAVPAA VAANGGSNVV VKADSRPKVT LLEAKPESDE EDDDESDEED GSEEDGSDSE KGMDVDEDDS EDEEEDDTEE EETPKKKPEV
201: SNKKRPNESA SKTPISAKKA KPATPHPAKK GGKSPNQSPK SGGQSSGAGS NKKQFNSGKQ FGSNNKGKGK GNGRA
001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA
Arabidopsis Description
HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.