Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034373.1-P | Field mustard | nucleus | 83.26 | 83.26 |
| CDY30525 | Canola | cytosol, nucleus, plastid | 82.79 | 80.91 |
| AT2G27840.3 | Thale cress | cytosol | 38.14 | 40.39 |
| Os01t0909150-00 | Rice | cytosol | 20.93 | 37.82 |
| CDY59279 | Canola | cytosol | 24.19 | 32.1 |
| Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 20.47 | 28.76 |
| CDY09153 | Canola | cytosol | 22.33 | 27.59 |
| CDY09155 | Canola | cytosol | 22.79 | 26.63 |
| CDY26948 | Canola | nucleus | 29.77 | 24.62 |
| CDX71005 | Canola | nucleus | 31.16 | 24.36 |
| CDX92341 | Canola | nucleus | 29.3 | 24.14 |
| CDY35706 | Canola | nucleus | 33.49 | 24.0 |
| EES04076 | Sorghum | nucleus | 30.7 | 23.83 |
| TraesCS1D01G454400.2 | Wheat | nucleus | 34.42 | 23.79 |
| EES19871 | Sorghum | nucleus | 33.02 | 23.75 |
| CDX88790 | Canola | nucleus | 30.23 | 23.64 |
| Zm00001d014548_P002 | Maize | cytosol | 20.47 | 22.92 |
| Zm00001d012092_P001 | Maize | nucleus | 29.77 | 22.46 |
| Zm00001d038832_P002 | Maize | nucleus | 31.16 | 22.33 |
| EES20078 | Sorghum | nucleus | 31.63 | 22.15 |
| TraesCS1A01G445700.4 | Wheat | nucleus | 31.16 | 21.68 |
| Zm00001d042433_P001 | Maize | nucleus | 24.19 | 21.14 |
| CDY09158 | Canola | plastid | 33.49 | 20.69 |
| KXG20698 | Sorghum | nucleus | 29.3 | 20.13 |
| KXG33961 | Sorghum | nucleus | 24.19 | 19.33 |
| Zm00001d011139_P005 | Maize | cytosol | 27.91 | 19.29 |
| GSMUA_Achr8P01440_001 | Banana | extracellular | 17.67 | 15.97 |
| CDY10359 | Canola | nucleus | 25.58 | 15.45 |
| TraesCS3B01G450400.1 | Wheat | nucleus | 25.58 | 14.55 |
| HORVU1Hr1G095140.2 | Barley | nucleus | 8.84 | 12.5 |
| CDX70287 | Canola | nucleus | 11.16 | 12.24 |
| TraesCS3D01G410300.2 | Wheat | nucleus | 20.0 | 11.81 |
| TraesCS3B01G450300.1 | Wheat | nucleus | 20.47 | 11.49 |
| TraesCS3A01G415200.1 | Wheat | nucleus | 21.4 | 11.41 |
| TraesCS3D01G410400.1 | Wheat | nucleus | 20.47 | 10.19 |
| HORVU3Hr1G092390.4 | Barley | nucleus, plastid | 20.0 | 10.17 |
| CDY59274 | Canola | plastid | 19.53 | 9.77 |
| HORVU3Hr1G092400.1 | Barley | nucleus | 2.79 | 9.38 |
Protein Annotations
| EnsemblPlants:CDX77140 | EnsemblPlantsGene:GSBRNA2T00127748001 | Gene3D:2.60.120.340 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | ProteinID:CDX77140 |
| ProteinID:CDX77140.1 | SEG:seg | UniParc:UPI0004EE4F57 | MapMan:12.3.2.2 | : | : |
Description
BnaC04g39350D
Coordinates
chrLK031809:+:1402081..1403742
Molecular Weight (calculated)
23740.5 Da
IEP (calculated)
4.387
GRAVY (calculated)
-0.880
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MCAYVVGIEI KPGKPTKVEQ EDGYMIHVSQ IAIGEFNKVG DKTVQVFVKV SGDDKQKLLI GNLSQKVPQV YLDLLFEQDF EVSHECKSSS VYLLGYKTVD
101: PMDGELNSDF DSEDEDIPMD MFRSELEKSK ANGQKANLED DESDSDEMGS DVDEDDSEEE EEDTPVKVEP PSKKRPNGGA MNNNNTVASK KAKVANQQGG
201: HKGHKCGGVH PPKRN
101: PMDGELNSDF DSEDEDIPMD MFRSELEKSK ANGQKANLED DESDSDEMGS DVDEDDSEEE EEDTPVKVEP PSKKRPNGGA MNNNNTVASK KAKVANQQGG
201: HKGHKCGGVH PPKRN
001: MEFWGIEIKP GKPFKVIQKD GFMVHASQVT LGDVEKVKKD ETFAVYVKIG DDENGFMIGN LSQKFPQFSI DLYLGHEFEI SHNSTSSVYL IGYRTFDAFD
101: ELDEEIDSDS ELDEYMEQQI AALPQNEINP EEDDESDSDE MGLDEDDDSS DEEDVEAEAP LKVAPPSKKM PNGAFEIAKG GKKNKSSGGK KRCPFPCGPS
201: CKK
101: ELDEEIDSDS ELDEYMEQQI AALPQNEINP EEDDESDSDE MGLDEDDDSS DEEDVEAEAP LKVAPPSKKM PNGAFEIAKG GKKNKSSGGK KRCPFPCGPS
201: CKK
Arabidopsis Description
HDT4Histone deacetylase HDT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4T3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.