CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038832_P002	Maize	nucleus	82.61	82.33
EES20078	Sorghum	nucleus	71.91	70.03
Os05t0597100-01	Rice	nucleus	60.87	61.28
TraesCS1D01G454400.2	Wheat	nucleus	57.86	55.63
HORVU1Hr1G095140.2	Barley	nucleus	27.76	54.61
VIT_03s0132g00020.t01	Wine grape	nucleus	21.07	53.85
TraesCS1A01G445700.4	Wheat	nucleus	55.52	53.72
Solyc09g009030.2.1	Tomato	nucleus	40.8	45.35
PGSC0003DMT400006927	Potato	nucleus	39.46	43.87
KRH67840	Soybean	nucleus	41.81	43.4
PGSC0003DMT400021644	Potato	nucleus	41.47	43.21
EES04076	Sorghum	nucleus	39.13	42.24
KRH25160	Soybean	nucleus	41.47	41.47
VIT_08s0007g03940.t01	Wine grape	nucleus	41.14	41.28
VIT_06s0061g01240.t01	Wine grape	nucleus	48.49	41.08
Solyc10g085560.1.1	Tomato	nucleus	42.14	41.04
KRH30517	Soybean	nucleus	38.8	40.14
KRH26575	Soybean	nucleus	41.14	40.07
KRG96126	Soybean	nucleus	39.13	39.93
PGSC0003DMT400005672	Potato	nucleus	37.79	38.97
Solyc11g066840.1.1	Tomato	nucleus	38.46	36.28
KRH22734	Soybean	nucleus	23.41	36.27
VIT_06s0009g03080.t01	Wine grape	nucleus	13.38	35.71
KXG20698	Sorghum	nucleus	36.12	34.5
KXG33961	Sorghum	nucleus	30.77	34.2
Bra034373.1-P	Field mustard	nucleus	24.41	33.95
AT2G27840.3	Thale cress	cytosol	22.74	33.5
GSMUA_Achr8P01440_001	Banana	extracellular	26.42	33.19
CDX77140	Canola	nucleus	23.75	33.02
PGSC0003DMT400068253	Potato	cytosol	38.8	32.58
CDY30525	Canola	cytosol, nucleus, plastid	22.74	30.91

Protein Annotations

EnsemblPlants:EES19871	EnsemblPlantsGene:SORBI_3009G211700	EntrezGene:8068982	Gene3D:2.60.120.340	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31802	PANTHER:PTHR31802:SF8	PFscan:PS50157
ProteinID:EES19871	ProteinID:EES19871.1	RefSeq:XP_002441441.1	ScanProsite:PS00028	SEG:seg	unigene:Sbi.12127
UniParc:UPI0001A8916E	UniProt:C5YUI2	MapMan:12.3.2.2	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:55767993..55771479

Molecular Weight (calculated)

32305.6 Da

IEP (calculated)

4.389

GRAVY (calculated)

-1.106

Length

299 amino acids

Sequence
(BLAST)

001: MEFWGLEVKP GSTVKCEPGH GFILHLSQAA LGESKKSDNA LMYVKVDDQK LAIGTLSIDK FPQVQFDLVF DKEFELSHTS KTTSVFFSGY KVEQPMEEDE
101: MDLDSEDEEE LDVPVIKENG KADGKEQKSQ EKAVAAASKS SLVSKKSKDD DDSDEDETDD SDSDDTDDSD EGEGLSPEEG DDDDSSDEDD TSDDEEEETP
201: TPKKKPEAGK KRPAENSLTP LSDKKAKVAT PSAQKTGGKK GAVHVATPHP AKGKTPANND KSKEKSPKSG GSVPCKSCTK TFNSEMALQA HSKAKHGAK

Best Arabidopsis Sequence Match ( AT5G22650.2 )
(BLAST)

001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA

Arabidopsis Description

HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.