CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33961	Sorghum	nucleus	42.17	49.07
Zm00001d014548_P002	Maize	cytosol	28.43	46.35
Os01t0909100-01	Rice	nucleus, peroxisome	31.63	40.57
EES19871	Sorghum	nucleus	34.5	36.12
PGSC0003DMT400021644	Potato	nucleus	31.63	34.49
VIT_03s0132g00020.t01	Wine grape	nucleus	12.46	33.33
EES20078	Sorghum	nucleus	32.27	32.9
PGSC0003DMT400006927	Potato	nucleus	28.11	32.71
Solyc09g009030.2.1	Tomato	nucleus	28.11	32.71
Solyc10g085560.1.1	Tomato	nucleus	30.99	31.6
VIT_08s0007g03940.t01	Wine grape	nucleus	30.03	31.54
TraesCS3D01G410300.2	Wheat	nucleus	36.42	31.32
KRH26575	Soybean	nucleus	30.35	30.94
TraesCS3B01G450300.1	Wheat	nucleus	37.7	30.81
KRH22734	Soybean	nucleus	18.85	30.57
KRH25160	Soybean	nucleus	29.07	30.43
EES04076	Sorghum	nucleus	26.2	29.6
KRG96126	Soybean	nucleus	27.48	29.35
CDX77140	Canola	nucleus	20.13	29.3
KRH67840	Soybean	nucleus	26.52	28.82
KRH30517	Soybean	nucleus	26.52	28.72
TraesCS3A01G415200.1	Wheat	nucleus	35.78	27.79
VIT_06s0061g01240.t01	Wine grape	nucleus	31.31	27.76
HORVU3Hr1G092390.4	Barley	nucleus, plastid	36.1	26.71
PGSC0003DMT400005672	Potato	nucleus	24.6	26.55
Bra034373.1-P	Field mustard	nucleus	18.21	26.51
AT2G27840.3	Thale cress	cytosol	16.93	26.11
CDY30525	Canola	cytosol, nucleus, plastid	17.89	25.45
Solyc11g066840.1.1	Tomato	nucleus	24.92	24.61
VIT_06s0009g03080.t01	Wine grape	nucleus	8.63	24.11
GSMUA_Achr8P01440_001	Banana	extracellular	18.21	23.95
PGSC0003DMT400068253	Potato	cytosol	22.68	19.94

Protein Annotations

MapMan:12.3.2.2	UniProt:A0A194YL67	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019829	GO:GO:0071577	InterPro:IPR013087	EnsemblPlants:KXG20698	ProteinID:KXG20698
ProteinID:KXG20698.2	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR31802	PANTHER:PTHR31802:SF7	EnsemblPlantsGene:SORBI_3010G237800
UniParc:UPI0009DC838F	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:58011351..58014479

Molecular Weight (calculated)

34308.1 Da

IEP (calculated)

4.865

GRAVY (calculated)

-0.991

Length

313 amino acids

Sequence
(BLAST)

001: MPMVNGIFEY WGVVVRPGAT VKCDPGEFYC HVSQIALQDS KGNEDVRVFV KADGKKFLIG TLSVDKYPQY TTSLVFEKEF ELLHTSKTST ISALGYKFRH
101: CNRKYDSETS TEEGDESNEE VPQAIPLYPN ADDDKSKESK CGVEKPAATE SSKSKVSLEE AKVPDKHKAD VGGDDNDESD EDVDSEDGES GDDESSSDED
201: DGESSNEDDD EDSPKSTKRN NRPAETPLKT PPGKKARITT PSMGKKSVSD DAKRSNHVHV ATPYPSSKQV KTARSIIDNS KQSTGYACKS CSKTFYSSVG
301: LETHCKVKHS ACK

Best Arabidopsis Sequence Match ( AT5G03740.1 )
(BLAST)

001: MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA

Arabidopsis Description

HDT3HDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UP12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.