Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g009030.2.1 | Tomato | nucleus | 95.91 | 95.91 |
| PGSC0003DMT400021644 | Potato | nucleus | 68.4 | 64.11 |
| HORVU3Hr1G092400.1 | Barley | nucleus | 13.38 | 56.25 |
| VIT_08s0007g03940.t01 | Wine grape | nucleus | 51.67 | 46.64 |
| KRH67840 | Soybean | nucleus | 48.7 | 45.49 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 18.96 | 45.13 |
| KRG96126 | Soybean | nucleus | 48.7 | 44.71 |
| TraesCS1D01G454400.2 | Wheat | nucleus | 48.7 | 42.12 |
| Os05t0597100-01 | Rice | nucleus | 46.1 | 41.75 |
| Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 23.42 | 41.18 |
| Zm00001d012092_P001 | Maize | nucleus | 42.75 | 40.35 |
| EES04076 | Sorghum | nucleus | 41.26 | 40.07 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 46.84 | 40.0 |
| Zm00001d038832_P002 | Maize | nucleus | 44.24 | 39.67 |
| TraesCS1A01G445700.4 | Wheat | nucleus | 45.35 | 39.48 |
| EES19871 | Sorghum | nucleus | 43.87 | 39.46 |
| EES20078 | Sorghum | nucleus | 43.12 | 37.78 |
| AT5G03740.1 | Thale cress | nucleus | 41.26 | 37.76 |
| Os01t0909150-00 | Rice | cytosol | 16.36 | 36.97 |
| HORVU1Hr1G095140.2 | Barley | nucleus | 20.45 | 36.18 |
| CDX70287 | Canola | nucleus | 24.91 | 34.18 |
| GSMUA_Achr10P... | Banana | plastid | 46.47 | 33.42 |
| Zm00001d042433_P001 | Maize | nucleus | 30.48 | 33.33 |
| PGSC0003DMT400005672 | Potato | nucleus | 35.32 | 32.76 |
| CDY10359 | Canola | nucleus | 39.78 | 30.06 |
| Zm00001d011139_P005 | Maize | cytosol | 34.57 | 29.9 |
| Bra009513.1-P | Field mustard | nucleus, plastid | 39.03 | 29.17 |
| KXG20698 | Sorghum | nucleus | 32.71 | 28.11 |
| TraesCS3B01G450400.1 | Wheat | nucleus | 38.29 | 27.25 |
| PGSC0003DMT400068253 | Potato | cytosol | 34.2 | 25.84 |
| KXG33961 | Sorghum | nucleus | 25.28 | 25.28 |
| Os01t0909100-01 | Rice | nucleus, peroxisome | 21.93 | 24.18 |
| Zm00001d014548_P002 | Maize | cytosol | 16.36 | 22.92 |
| TraesCS3D01G410300.2 | Wheat | nucleus | 29.74 | 21.98 |
| TraesCS3B01G450300.1 | Wheat | nucleus | 30.11 | 21.15 |
| Os01t0909500-02 | Rice | cytosol | 18.22 | 20.76 |
| TraesCS3A01G415200.1 | Wheat | nucleus | 29.74 | 19.85 |
| HORVU3Hr1G092390.4 | Barley | nucleus, plastid | 30.48 | 19.39 |
| TraesCS3D01G410400.1 | Wheat | nucleus | 24.16 | 15.05 |
Protein Annotations
| EMBL:DQ252492 | EnsemblPlants:PGSC0003DMT400006927 | EnsemblPlantsGene:PGSC0003DMG400002684 | EntrezGene:102595604 | Gene3D:2.60.120.340 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 |
| PFscan:PS50157 | PGSC:PGSC0003DMG400002684 | ProteinID:ABB55369 | ProteinID:ABB55369.1 | RefSeq:XP_006341171.1 | ScanProsite:PS00028 |
| SEG:seg | UniParc:UPI0002953A1E | UniProt:M0ZS65 | MapMan:12.3.2.2 | : | : |
Description
Histone deacetylase HDT1 [Source:PGSC_GENE;Acc:PGSC0003DMG400002684]
Coordinates
chr9:+:3930789..3935360
Molecular Weight (calculated)
29101.1 Da
IEP (calculated)
4.672
GRAVY (calculated)
-1.146
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGAEVKS GEPLTVQPGD GMVLHLSQAS LGELKKDKSE SVCLSVNIDG KKLVLGTLNS EKVPQQQFDL VFDRDFELSH NLKSGSVYFF GYKATNPFEE
101: EEDDEDDYDE SDEDIPLTLA NSGKPEPKEA GKSNAGKDSA SGKQKVRIVE PTKDDEDESS DDDDSEMGED EDDSDDSEEE TPKKAEPAKK RKADSATKTP
201: VTDKKAKLTT PQKTDGKKGG GHVATPHPSK QASKTPKSAG SHHCKPCNRS FGSEGALDSH SKAKHSAGK
101: EEDDEDDYDE SDEDIPLTLA NSGKPEPKEA GKSNAGKDSA SGKQKVRIVE PTKDDEDESS DDDDSEMGED EDDSDDSEEE TPKKAEPAKK RKADSATKTP
201: VTDKKAKLTT PQKTDGKKGG GHVATPHPSK QASKTPKSAG SHHCKPCNRS FGSEGALDSH SKAKHSAGK
001: MEFWGIEVKS GKPVTVTPEE GILIHVSQAS LGECKNKKGE FVPLHVKVGN QNLVLGTLST ENIPQLFCDL VFDKEFELSH TWGKGSVYFV GYKTPNIEPQ
101: GYSEEEEEEE EEVPAGNAAK AVAKPKAKPA EVKPAVDDEE DESDSDGMDE DDSDGEDSEE EEPTPKKPAS SKKRANETTP KAPVSAKKAK VAVTPQKTDE
201: KKKGGKAANQ SPKSASQVSC GSCKKTFNSG NALESHNKAK HAAAK
101: GYSEEEEEEE EEVPAGNAAK AVAKPKAKPA EVKPAVDDEE DESDSDGMDE DDSDGEDSEE EEPTPKKPAS SKKRANETTP KAPVSAKKAK VAVTPQKTDE
201: KKKGGKAANQ SPKSASQVSC GSCKKTFNSG NALESHNKAK HAAAK
Arabidopsis Description
HDT1Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.