Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH22734 | Soybean | nucleus | 36.97 | 22.8 |
| Bra034373.1-P | Field mustard | nucleus | 41.18 | 22.79 |
| AT2G27840.3 | Thale cress | cytosol | 36.97 | 21.67 |
| CDX77140 | Canola | nucleus | 37.82 | 20.93 |
| CDY30525 | Canola | cytosol, nucleus, plastid | 37.82 | 20.45 |
| Os05t0597100-01 | Rice | nucleus | 42.86 | 17.17 |
| Solyc09g009030.2.1 | Tomato | nucleus | 36.97 | 16.36 |
| PGSC0003DMT400006927 | Potato | nucleus | 36.97 | 16.36 |
| PGSC0003DMT400021644 | Potato | nucleus | 38.66 | 16.03 |
| KRH30517 | Soybean | nucleus | 37.82 | 15.57 |
| Solyc10g085560.1.1 | Tomato | nucleus | 39.5 | 15.31 |
| KRH25160 | Soybean | nucleus | 37.82 | 15.05 |
| Os01t0909100-01 | Rice | nucleus, peroxisome | 30.25 | 14.75 |
| VIT_08s0007g03940.t01 | Wine grape | nucleus | 34.45 | 13.76 |
| KRH26575 | Soybean | nucleus | 35.29 | 13.68 |
| KRH67840 | Soybean | nucleus | 31.93 | 13.19 |
| KRG96126 | Soybean | nucleus | 31.93 | 12.97 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 36.97 | 12.46 |
| PGSC0003DMT400005672 | Potato | nucleus | 30.25 | 12.41 |
| Os01t0909500-02 | Rice | cytosol | 24.37 | 12.29 |
| Solyc11g066840.1.1 | Tomato | nucleus | 31.93 | 11.99 |
| PGSC0003DMT400068253 | Potato | cytosol | 26.89 | 8.99 |
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 1.68 | 1.71 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 0.84 | 0.89 |
Protein Annotations
| EnsemblPlants:Os01t0909150-00 | EnsemblPlantsGene:Os01g0909150 | Gene3D:2.60.120.340 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | ProteinID:BAS75820.1 |
| UniParc:UPI000393A43A | UniProt:A0A0P0VBW4 | MapMan:12.3.2.2 | : | : | : |
Description
Conserved hypothetical protein. (Os01t0909150-00)
Coordinates
chr1:-:39592613..39595176
Molecular Weight (calculated)
13179.7 Da
IEP (calculated)
4.826
GRAVY (calculated)
-0.029
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGIEVKP GKAVSFNVDD ECVIHISQVA LGETKKAGSE NVVVSVKVDG KKTVIGNLSA KNHPQFMCDL FIGNDFELSH SSKTTSVFLC GYKTDMPNPY
101: EYPSTYALGI IFESYLDFI
101: EYPSTYALGI IFESYLDFI
001: MEFWGIEVKS GKPVTVTPEE GILIHVSQAS LGECKNKKGE FVPLHVKVGN QNLVLGTLST ENIPQLFCDL VFDKEFELSH TWGKGSVYFV GYKTPNIEPQ
101: GYSEEEEEEV PAGNAAKAVA KPKAKPAEVK PAVDDEEDES DSDGMDEDDS DGEDSEEEEP TPKKPASSKK RANETTPKAP VSAKKAKVAV TPQKTDEKKK
201: GGKAANQSPK SASQVSCGSC KKTFNSGNAL ESHNKAKHAA AK
101: GYSEEEEEEV PAGNAAKAVA KPKAKPAEVK PAVDDEEDES DSDGMDEDDS DGEDSEEEEP TPKKPASSKK RANETTPKAP VSAKKAKVAV TPQKTDEKKK
201: GGKAANQSPK SASQVSCGSC KKTFNSGNAL ESHNKAKHAA AK
Arabidopsis Description
HDT1Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.