Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
nucleus: 27291164 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P07580_001 | Banana | cytosol | 26.42 | 45.13 |
| KRH26575 | Soybean | nucleus | 69.95 | 43.97 |
| Os01t0909150-00 | Rice | cytosol | 22.8 | 36.97 |
| KRH25160 | Soybean | nucleus | 48.7 | 31.44 |
| KRH30517 | Soybean | nucleus | 44.56 | 29.76 |
| Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 23.32 | 29.41 |
| KRG96126 | Soybean | nucleus | 41.45 | 27.3 |
| TraesCS1D01G454400.2 | Wheat | nucleus | 43.52 | 27.01 |
| KRH67840 | Soybean | nucleus | 39.9 | 26.74 |
| Os01t0909100-01 | Rice | nucleus, peroxisome | 33.68 | 26.64 |
| Os05t0597100-01 | Rice | nucleus | 40.41 | 26.26 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 39.9 | 24.44 |
| EES20078 | Sorghum | nucleus | 38.86 | 24.43 |
| TraesCS1A01G445700.4 | Wheat | nucleus | 38.86 | 24.27 |
| EES04076 | Sorghum | nucleus | 34.72 | 24.19 |
| Zm00001d014548_P002 | Maize | cytosol | 23.83 | 23.96 |
| EES19871 | Sorghum | nucleus | 36.27 | 23.41 |
| Zm00001d012092_P001 | Maize | nucleus | 34.2 | 23.16 |
| Zm00001d038832_P002 | Maize | nucleus | 35.75 | 23.0 |
| Zm00001d042433_P001 | Maize | nucleus | 27.98 | 21.95 |
| Os01t0909500-02 | Rice | cytosol | 25.39 | 20.76 |
| Zm00001d011139_P005 | Maize | cytosol | 33.16 | 20.58 |
| GSMUA_Achr10P... | Banana | plastid | 38.86 | 20.05 |
| KXG20698 | Sorghum | nucleus | 30.57 | 18.85 |
| KXG33961 | Sorghum | nucleus | 25.39 | 18.22 |
| TraesCS3B01G450400.1 | Wheat | nucleus | 32.64 | 16.67 |
| TraesCS3B01G450300.1 | Wheat | nucleus | 27.46 | 13.84 |
| TraesCS3D01G410300.2 | Wheat | nucleus | 25.39 | 13.46 |
| TraesCS3A01G415200.1 | Wheat | nucleus | 26.42 | 12.66 |
| HORVU3Hr1G092390.4 | Barley | nucleus, plastid | 26.94 | 12.29 |
| TraesCS3D01G410400.1 | Wheat | nucleus | 27.46 | 12.27 |
| HORVU3Hr1G092400.1 | Barley | nucleus | 3.11 | 9.38 |
| HORVU1Hr1G095140.2 | Barley | nucleus | 4.15 | 5.26 |
Protein Annotations
| EMBL:ACUP02008430 | EnsemblPlants:KRH22734 | EnsemblPlantsGene:GLYMA_13G319500 | Gene3D:2.60.120.340 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 |
| ProteinID:KRH22734 | ProteinID:KRH22734.1 | SEG:seg | UniParc:UPI000233DF64 | UniProt:K7MJZ7 | MapMan:12.3.2.2 |
Description
hypothetical protein
Coordinates
chr13:+:41389443..41390877
Molecular Weight (calculated)
21376.6 Da
IEP (calculated)
4.037
GRAVY (calculated)
-0.618
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGAEVKV GESVKVDPAE FEACIHLSQA ALGEAKKDKP EPVVLYMKVG EQKFVLGTLS REKIPQISLE LVLEKEFELS HSSKSASVHF CGYKAYYDAD
101: NSDEDEFTDS DEDDEDVPLI NTENGKPETK AEDLKVPESK KAVAKASGSA KQVKVVEPKK DNEEDSDDDS DDDDFGSSDE EVLICFGFEL LLL
101: NSDEDEFTDS DEDDEDVPLI NTENGKPETK AEDLKVPESK KAVAKASGSA KQVKVVEPKK DNEEDSDDDS DDDDFGSSDE EVLICFGFEL LLL
001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA
Arabidopsis Description
HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.