Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3B01G450400.1 | Wheat | nucleus | 33.8 | 38.62 |
Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 11.11 | 31.37 |
Zm00001d012092_P001 | Maize | nucleus | 18.75 | 28.42 |
KRH22734 | Soybean | nucleus | 12.27 | 27.46 |
EES04076 | Sorghum | nucleus | 17.36 | 27.08 |
Solyc09g009030.2.1 | Tomato | nucleus | 15.05 | 24.16 |
PGSC0003DMT400006927 | Potato | nucleus | 15.05 | 24.16 |
TraesCS1D01G454400.2 | Wheat | nucleus | 17.36 | 24.12 |
AT2G27840.3 | Thale cress | cytosol | 11.11 | 23.65 |
Zm00001d042433_P001 | Maize | nucleus | 13.43 | 23.58 |
KRH30517 | Soybean | nucleus | 15.51 | 23.18 |
KRH26575 | Soybean | nucleus | 16.44 | 23.13 |
KRH67840 | Soybean | nucleus | 15.28 | 22.92 |
VIT_08s0007g03940.t01 | Wine grape | nucleus | 15.74 | 22.82 |
KRH25160 | Soybean | nucleus | 15.51 | 22.41 |
PGSC0003DMT400005672 | Potato | nucleus | 14.35 | 21.38 |
KRG96126 | Soybean | nucleus | 14.35 | 21.16 |
Solyc11g066840.1.1 | Tomato | nucleus | 15.51 | 21.14 |
PGSC0003DMT400021644 | Potato | nucleus | 13.89 | 20.91 |
CDX77140 | Canola | nucleus | 10.19 | 20.47 |
Bra034373.1-P | Field mustard | nucleus | 9.95 | 20.0 |
Solyc10g085560.1.1 | Tomato | nucleus | 14.12 | 19.87 |
VIT_06s0061g01240.t01 | Wine grape | nucleus | 15.97 | 19.55 |
PGSC0003DMT400068253 | Potato | cytosol | 15.97 | 19.38 |
CDY30525 | Canola | cytosol, nucleus, plastid | 9.72 | 19.09 |
TraesCS3D01G410300.2 | Wheat | nucleus | 14.35 | 17.03 |
HORVU3Hr1G092400.1 | Barley | nucleus | 2.31 | 15.62 |
GSMUA_Achr8P01440_001 | Banana | extracellular | 6.02 | 10.92 |
VIT_03s0132g00020.t01 | Wine grape | nucleus | 1.85 | 6.84 |
VIT_06s0009g03080.t01 | Wine grape | nucleus | 1.62 | 6.25 |
Protein Annotations
EnsemblPlants:TraesCS3D01G410400.1 | EnsemblPlantsGene:TraesCS3D01G410400 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | SEG:seg | MapMan:12.3.2.2 |
Description
No Description!
Coordinates
chr3D:-:523708488..523711250
Molecular Weight (calculated)
46109.4 Da
IEP (calculated)
4.347
GRAVY (calculated)
-0.868
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MKFWGVEVKP GQTVYCDPGE GRVVHLTQVA LGEAEKGSVG ILVSAKIGDQ KGAIGTLSAE NHPHIPCDLI FEKQFELSHS SKTASVFACG YKIFVPICES
101: DSSELDSSEF DSSESDSSES DSSEDEVETV NNQVTNRIVG NVVKPPTTKD DKKVTDKPDS GEDDSDFSSD SDDYADDGYS SLDTDSEEDG TGSEEMDTSS
201: KEEDKDSPKT EDGKKAVAET ALKTPASDDT SSKEGSGDEE NKNTPKPEDG KKTAAETALK TPASTASSGP CALQPEDGEK TVAAETDLKT PASDDTSNKE
301: DTNDQEDKST PKPEVGGKRA AETALETPAP DKKAKIETPS GQDAGAVVRT VFNQLNPHLL QMTRRLSMWQ LPIQQSRPTR RLQGTASKTS SPNMSAAPTP
401: ASRAAGHSAV FQRSNRMRRP STLELLLVTT CC
101: DSSELDSSEF DSSESDSSES DSSEDEVETV NNQVTNRIVG NVVKPPTTKD DKKVTDKPDS GEDDSDFSSD SDDYADDGYS SLDTDSEEDG TGSEEMDTSS
201: KEEDKDSPKT EDGKKAVAET ALKTPASDDT SSKEGSGDEE NKNTPKPEDG KKTAAETALK TPASTASSGP CALQPEDGEK TVAAETDLKT PASDDTSNKE
301: DTNDQEDKST PKPEVGGKRA AETALETPAP DKKAKIETPS GQDAGAVVRT VFNQLNPHLL QMTRRLSMWQ LPIQQSRPTR RLQGTASKTS SPNMSAAPTP
401: ASRAAGHSAV FQRSNRMRRP STLELLLVTT CC
001: MEFWGIEVKS GKPVTVTPEE GILIHVSQAS LGECKNKKGE FVPLHVKVGN QNLVLGTLST ENIPQLFCDL VFDKEFELSH TWGKGSVYFV GYKTPNIEPQ
101: GYSEEEEEEV PAGNAAKAVA KPKAKPAEVK PAVDDEEDES DSDGMDEDDS DGEDSEEEEP TPKKPASSKK RANETTPKAP VSAKKAKVAV TPQKTDEKKK
201: GGKAANQSPK SASQVSCGSC KKTFNSGNAL ESHNKAKHAA AK
101: GYSEEEEEEV PAGNAAKAVA KPKAKPAEVK PAVDDEEDES DSDGMDEDDS DGEDSEEEEP TPKKPASSKK RANETTPKAP VSAKKAKVAV TPQKTDEKKK
201: GGKAANQSPK SASQVSCGSC KKTFNSGNAL ESHNKAKHAA AK
Arabidopsis Description
HDT1Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.