Factsheet for TraesCS3B01G450400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G092400.1	Barley	nucleus	12.17	71.88
Zm00001d012095_P001	Maize	cytosol, nucleus, plastid	16.93	41.83
Zm00001d012092_P001	Maize	nucleus	30.42	40.35
VIT_03s0132g00020.t01	Wine grape	nucleus	12.43	40.17
Solyc09g009030.2.1	Tomato	nucleus	28.04	39.41
EES04076	Sorghum	nucleus	28.57	38.99
PGSC0003DMT400006927	Potato	nucleus	27.25	38.29
PGSC0003DMT400021644	Potato	nucleus	28.04	36.93
VIT_08s0007g03940.t01	Wine grape	nucleus	28.31	35.91
KRH67840	Soybean	nucleus	27.25	35.76
Solyc10g085560.1.1	Tomato	nucleus	28.84	35.5
KRH25160	Soybean	nucleus	27.78	35.12
KRH26575	Soybean	nucleus	27.51	33.88
TraesCS3D01G410400.1	Wheat	nucleus	38.62	33.8
KRG96126	Soybean	nucleus	26.19	33.79
KRH30517	Soybean	nucleus	25.4	33.22
KRH22734	Soybean	nucleus	16.67	32.64
VIT_06s0061g01240.t01	Wine grape	nucleus	29.89	32.01
Zm00001d042433_P001	Maize	nucleus	19.58	30.08
Solyc11g066840.1.1	Tomato	nucleus	24.07	28.71
PGSC0003DMT400005672	Potato	nucleus	21.96	28.62
AT2G27840.3	Thale cress	cytosol	15.34	28.57
VIT_06s0009g03080.t01	Wine grape	nucleus	8.2	27.68
TraesCS3B01G450300.1	Wheat	nucleus	25.93	25.59
CDX77140	Canola	nucleus	14.55	25.58
Bra034373.1-P	Field mustard	nucleus	14.29	25.12
PGSC0003DMT400068253	Potato	cytosol	22.75	24.16
CDY30525	Canola	cytosol, nucleus, plastid	14.02	24.09
GSMUA_Achr8P01440_001	Banana	extracellular	14.55	23.11

Protein Annotations

EnsemblPlants:TraesCS3B01G450400.1	EnsemblPlantsGene:TraesCS3B01G450400	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31802	PANTHER:PTHR31802:SF8	PFscan:PS50157	ScanProsite:PS00028
SEG:seg	MapMan:12.3.2.2	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:690859314..690861997

Molecular Weight (calculated)

40329.0 Da

IEP (calculated)

4.384

GRAVY (calculated)

-1.091

Length

378 amino acids

Sequence
(BLAST)

001: MKFWGVEVKP GQTVYCDPGE GRVVHLTQVA LGETEKRSVG IPVSAKIGDQ KGVIGTLSAE NHPQILCDLI FEKQFELSHS SKTASVFACG YKIPKHNCTS
101: DSSESDSSES DSSEFDSSES DSSEDEVETV NNQVANPIVG NVAKPPTTKD DKKVTDNHDS GEDDSDFYST DSDDYDDDGY SSLDTDSEED GTSSEEMDTS
201: SKEEDKDSPK PEDGKKAVAE TALKTPASDD TSSKEGSSDE EDKNTPKPED GEKTVGAETA LKTPASDDTS NKEGTSDQED KNTPKPEVGT KRAAETALET
301: PAPDKKAKIE TPSGQDTDDK KIVHVATPHP AKQADKAPGN SKQHLKSKYV GGAHACKSCS RTFGSASALQ SHEKAKHA

Best Arabidopsis Sequence Match ( AT3G44750.2 )
(BLAST)

001: MEFWGIEVKS GKPVTVTPEE GILIHVSQAS LGECKNKKGE FVPLHVKVGN QNLVLGTLST ENIPQLFCDL VFDKEFELSH TWGKGSVYFV GYKTPNIEPQ
101: GYSEEEEEEV PAGNAAKAVA KPKAKPAEVK PAVDDEEDES DSDGMDEDDS DGEDSEEEEP TPKKPASSKK RANETTPKAP VSAKKAKVAV TPQKTDEKKK
201: GGKAANQSPK SASQVSCGSC KKTFNSGNAL ESHNKAKHAA AK

Arabidopsis Description

HDT1Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.