CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30517	Soybean	nucleus	74.92	77.51
KRH26575	Soybean	nucleus	56.52	55.05
KRH22734	Soybean	nucleus	31.44	48.7
GSMUA_Achr8P07580_001	Banana	cytosol	16.39	43.36
HORVU3Hr1G092400.1	Barley	nucleus	9.03	42.19
EES19871	Sorghum	nucleus	41.47	41.47
Zm00001d038832_P002	Maize	nucleus	40.8	40.67
Os05t0597100-01	Rice	nucleus	39.8	40.07
TraesCS1D01G454400.2	Wheat	nucleus	41.14	39.55
EES20078	Sorghum	nucleus	39.8	38.76
KRH67840	Soybean	nucleus	37.12	38.54
EES04076	Sorghum	nucleus	35.45	38.27
KRG96126	Soybean	nucleus	37.46	38.23
Os01t0909150-00	Rice	cytosol	15.05	37.82
GSMUA_Achr3P22840_001	Banana	nucleus	39.13	37.14
TraesCS1A01G445700.4	Wheat	nucleus	37.79	36.57
Zm00001d012092_P001	Maize	nucleus	34.45	36.14
Zm00001d012095_P001	Maize	cytosol, nucleus, plastid	17.39	33.99
HORVU1Hr1G095140.2	Barley	nucleus	17.06	33.55
KXG33961	Sorghum	nucleus	27.42	30.48
GSMUA_Achr10P...	Banana	plastid	37.46	29.95
KXG20698	Sorghum	nucleus	30.43	29.07
Zm00001d011139_P005	Maize	cytosol	29.77	28.62
TraesCS3B01G450400.1	Wheat	nucleus	35.12	27.78
Zm00001d042433_P001	Maize	nucleus	22.74	27.64
Os01t0909500-02	Rice	cytosol	20.74	26.27
Os01t0909100-01	Rice	nucleus, peroxisome	21.4	26.23
Zm00001d014548_P002	Maize	cytosol	15.38	23.96
TraesCS3D01G410300.2	Wheat	nucleus	28.09	23.08
TraesCS3B01G450300.1	Wheat	nucleus	29.1	22.72
TraesCS3A01G415200.1	Wheat	nucleus	28.76	21.34
HORVU3Hr1G092390.4	Barley	nucleus, plastid	27.76	19.62
TraesCS3D01G410400.1	Wheat	nucleus	22.41	15.51

Protein Annotations

MapMan:12.3.2.2	Gene3D:2.60.120.340	Gene3D:3.30.160.60	EMBL:ACUP02007217	EnsemblPlantsGene:GLYMA_12G084700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569
GO:GO:0016787	GO:GO:0046872	UniProt:I1LRC2	InterPro:IPR013087	EnsemblPlants:KRH25160	ProteinID:KRH25160
ProteinID:KRH25160.1	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR31802	PANTHER:PTHR31802:SF8	UniParc:UPI00023D09F9
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:6839463..6843048

Molecular Weight (calculated)

31770.2 Da

IEP (calculated)

4.511

GRAVY (calculated)

-0.972

Length

299 amino acids

Sequence
(BLAST)

001: MDAPMEFWGV EVKVGQTVTV DPMDPVDSYI HISQVALGEA KKDKPNEPVV LYLKVGEQKI VLGTLSRDGI PHLSLDLVLD SDSELSHTSK SASVFFCGYK
101: VLTGNDNASD FSDSSEEDEE LALEGQDNGK PELKAEGAKV TKPSKSIPKI GAPAKAADPK KDEDDDSDDE SDDDLAGEDE SGSSDEMDDD SNSEEESDGD
201: DEETPAKKVD QGKKRPNESA AKTPISAKKA KTATPEKTDG KKSVHVATPH PSKKGGKTPN STKGQTPNSA GQLSCASCKK SFTNEAGLQQ HKKAKHGGQ

Best Arabidopsis Sequence Match ( AT5G03740.1 )
(BLAST)

001: MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA

Arabidopsis Description

HDT3HDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UP12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.