CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19871	Sorghum	nucleus	70.03	71.91
Os05t0597100-01	Rice	nucleus	55.05	56.9
TraesCS1D01G454400.2	Wheat	nucleus	53.09	52.41
HORVU1Hr1G095140.2	Barley	nucleus	25.73	51.97
TraesCS1A01G445700.4	Wheat	nucleus	50.81	50.49
VIT_03s0132g00020.t01	Wine grape	nucleus	18.89	49.57
Solyc09g009030.2.1	Tomato	nucleus	38.44	43.87
PGSC0003DMT400021644	Potato	nucleus	40.39	43.21
PGSC0003DMT400006927	Potato	nucleus	37.78	43.12
Zm00001d011139_P005	Maize	cytosol	42.35	41.8
KRH67840	Soybean	nucleus	38.76	41.32
EES04076	Sorghum	nucleus	37.13	41.16
Solyc10g085560.1.1	Tomato	nucleus	41.04	41.04
KRH26575	Soybean	nucleus	40.39	40.39
VIT_08s0007g03940.t01	Wine grape	nucleus	38.76	39.93
KRH25160	Soybean	nucleus	38.76	39.8
KRH30517	Soybean	nucleus	37.46	39.79
KRG96126	Soybean	nucleus	37.46	39.25
KRH22734	Soybean	nucleus	24.43	38.86
VIT_06s0061g01240.t01	Wine grape	nucleus	44.63	38.81
PGSC0003DMT400005672	Potato	nucleus	33.55	35.52
Solyc11g066840.1.1	Tomato	nucleus	36.16	35.02
VIT_06s0009g03080.t01	Wine grape	nucleus	12.38	33.93
Bra034373.1-P	Field mustard	nucleus	23.13	33.02
KXG33961	Sorghum	nucleus	28.66	32.71
KXG20698	Sorghum	nucleus	32.9	32.27
CDX77140	Canola	nucleus	22.15	31.63
GSMUA_Achr8P01440_001	Banana	extracellular	24.43	31.51
CDY30525	Canola	cytosol, nucleus, plastid	22.15	30.91
AT2G27840.3	Thale cress	cytosol	19.54	29.56
PGSC0003DMT400068253	Potato	cytosol	34.2	29.49

Protein Annotations

EnsemblPlants:EES20078	EnsemblPlantsGene:SORBI_3009G260600	EntrezGene:8066575	Gene3D:2.60.120.340	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31802	PANTHER:PTHR31802:SF8	PFscan:PS50157
ProteinID:EES20078	ProteinID:EES20078.1	RefSeq:XP_002441648.1	ScanProsite:PS00028	SEG:seg	unigene:Sbi.21466
UniParc:UPI0001A894A2	UniProt:C5YX40	MapMan:12.3.2.2	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:59367712..59370487

Molecular Weight (calculated)

33372.1 Da

IEP (calculated)

4.538

GRAVY (calculated)

-1.095

Length

307 amino acids

Sequence
(BLAST)

001: MEFWGLEVKP GSTVKCEPGH GFILHLSQAA LGESKKSDSV LMYVKVDDEK LAIGTLSIDK NPQIQCDLVF DKEFELSHTS KTTSVFLTGY KVEQPTEEDE
101: MDLDSEDEEE EELNVPVIKE NGKAEGKEKQ KSQEKAVSAA SKSSLASRLV GKKSKDEDDS DEDETDDSDV DETDDSDEGE GLSPEEGDDD DSSDEDDTSE
201: GEEETPTPKK PEAGKKRAAE NALKTLLSDK KVKVATPSAQ KTGGKKGATH VATPYPAKRA GKTPANNDKS KERSPRSGRS VPCKSCSKTF NSEMALQAHS
301: KAKHRAK

Best Arabidopsis Sequence Match ( AT5G03740.1 )
(BLAST)

001: MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA

Arabidopsis Description

HDT3HDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UP12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.