Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400006927 | Potato | nucleus | 95.91 | 95.91 |
| Solyc10g085560.1.1 | Tomato | nucleus | 68.77 | 60.26 |
| HORVU3Hr1G092400.1 | Barley | nucleus | 13.38 | 56.25 |
| VIT_08s0007g03940.t01 | Wine grape | nucleus | 51.3 | 46.31 |
| KRH67840 | Soybean | nucleus | 49.07 | 45.83 |
| KRG96126 | Soybean | nucleus | 49.44 | 45.39 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 18.96 | 45.13 |
| Os05t0597100-01 | Rice | nucleus | 47.58 | 43.1 |
| TraesCS1D01G454400.2 | Wheat | nucleus | 49.81 | 43.09 |
| Zm00001d012092_P001 | Maize | nucleus | 44.24 | 41.75 |
| Zm00001d038832_P002 | Maize | nucleus | 46.1 | 41.33 |
| EES19871 | Sorghum | nucleus | 45.35 | 40.8 |
| EES04076 | Sorghum | nucleus | 42.01 | 40.79 |
| TraesCS1A01G445700.4 | Wheat | nucleus | 46.1 | 40.13 |
| Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 22.68 | 39.87 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 46.47 | 39.68 |
| EES20078 | Sorghum | nucleus | 43.87 | 38.44 |
| AT5G03740.1 | Thale cress | nucleus | 41.26 | 37.76 |
| HORVU1Hr1G095140.2 | Barley | nucleus | 21.19 | 37.5 |
| Os01t0909150-00 | Rice | cytosol | 16.36 | 36.97 |
| GSMUA_Achr10P... | Banana | plastid | 48.33 | 34.76 |
| Zm00001d042433_P001 | Maize | nucleus | 31.23 | 34.15 |
| CDX70287 | Canola | nucleus | 24.54 | 33.67 |
| Zm00001d011139_P005 | Maize | cytosol | 34.57 | 29.9 |
| Solyc11g066840.1.1 | Tomato | nucleus | 34.94 | 29.65 |
| CDY10359 | Canola | nucleus | 39.03 | 29.49 |
| Bra009513.1-P | Field mustard | nucleus, plastid | 38.66 | 28.89 |
| KXG20698 | Sorghum | nucleus | 32.71 | 28.11 |
| TraesCS3B01G450400.1 | Wheat | nucleus | 39.41 | 28.04 |
| KXG33961 | Sorghum | nucleus | 26.02 | 26.02 |
| Os01t0909100-01 | Rice | nucleus, peroxisome | 21.19 | 23.36 |
| Zm00001d014548_P002 | Maize | cytosol | 16.36 | 22.92 |
| TraesCS3D01G410300.2 | Wheat | nucleus | 29.74 | 21.98 |
| TraesCS3B01G450300.1 | Wheat | nucleus | 30.11 | 21.15 |
| TraesCS3A01G415200.1 | Wheat | nucleus | 30.48 | 20.35 |
| Os01t0909500-02 | Rice | cytosol | 17.47 | 19.92 |
| HORVU3Hr1G092390.4 | Barley | nucleus, plastid | 29.37 | 18.68 |
| TraesCS3D01G410400.1 | Wheat | nucleus | 24.16 | 15.05 |
Protein Annotations
| EnsemblPlants:Solyc09g009030.2.1 | EnsemblPlantsGene:Solyc09g009030.2 | Gene3D:2.60.120.340 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | PFscan:PS50157 | ScanProsite:PS00028 |
| SEG:seg | UniParc:UPI000276C2D8 | UniProt:K4CQT3 | MapMan:12.3.2.2 | : | : |
Description
No Description!
Coordinates
chr9:-:2377785..2382402
Molecular Weight (calculated)
28982.9 Da
IEP (calculated)
4.712
GRAVY (calculated)
-1.117
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGAEVKS GEPLTVQPGD GMVLHLSQAS LGELKKDKSE SACLSVNIDG KKLVLGTLNS EKVPQQQFDL VFDKDFELSH NLKSGSVYFF GYKATNPFDE
101: EEDDEDDYDD SDEDIPLTLA NSGKPDPKEA GKSNAGKDSA SGKQKVRIVE PTKDDEDESS DDDGSDLGED EDDSDESEEE TPKKAEPAKK RKADSATKTP
201: VTDKKAKLTT PQKTDGKKGG VHVATPHPSK QASKTPKSAG SHHCKPCNRS FGSEGALESH SKAKHSAGK
101: EEDDEDDYDD SDEDIPLTLA NSGKPDPKEA GKSNAGKDSA SGKQKVRIVE PTKDDEDESS DDDGSDLGED EDDSDESEEE TPKKAEPAKK RKADSATKTP
201: VTDKKAKLTT PQKTDGKKGG VHVATPHPSK QASKTPKSAG SHHCKPCNRS FGSEGALESH SKAKHSAGK
001: MEFWGIEVKS GKPVTVTPEE GILIHVSQAS LGECKNKKGE FVPLHVKVGN QNLVLGTLST ENIPQLFCDL VFDKEFELSH TWGKGSVYFV GYKTPNIEPQ
101: GYSEEEEEEE EEVPAGNAAK AVAKPKAKPA EVKPAVDDEE DESDSDGMDE DDSDGEDSEE EEPTPKKPAS SKKRANETTP KAPVSAKKAK VAVTPQKTDE
201: KKKGGKAANQ SPKSASQVSC GSCKKTFNSG NALESHNKAK HAAAK
101: GYSEEEEEEE EEVPAGNAAK AVAKPKAKPA EVKPAVDDEE DESDSDGMDE DDSDGEDSEE EEPTPKKPAS SKKRANETTP KAPVSAKKAK VAVTPQKTDE
201: KKKGGKAANQ SPKSASQVSC GSCKKTFNSG NALESHNKAK HAAAK
Arabidopsis Description
HDT1Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.