Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012092_P001 | Maize | nucleus | 72.2 | 70.18 |
| Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 35.38 | 64.05 |
| Zm00001d042433_P001 | Maize | nucleus | 45.85 | 51.63 |
| Solyc09g009030.2.1 | Tomato | nucleus | 40.79 | 42.01 |
| PGSC0003DMT400006927 | Potato | nucleus | 40.07 | 41.26 |
| PGSC0003DMT400021644 | Potato | nucleus | 41.16 | 39.72 |
| EES19871 | Sorghum | nucleus | 42.24 | 39.13 |
| Solyc10g085560.1.1 | Tomato | nucleus | 41.88 | 37.78 |
| HORVU3Hr1G092400.1 | Barley | nucleus | 8.66 | 37.5 |
| EES20078 | Sorghum | nucleus | 41.16 | 37.13 |
| KRG96126 | Soybean | nucleus | 38.63 | 36.52 |
| KRH67840 | Soybean | nucleus | 37.91 | 36.46 |
| VIT_08s0007g03940.t01 | Wine grape | nucleus | 38.27 | 35.57 |
| KRH25160 | Soybean | nucleus | 38.27 | 35.45 |
| KRH26575 | Soybean | nucleus | 38.99 | 35.18 |
| KRH22734 | Soybean | nucleus | 24.19 | 34.72 |
| KRH30517 | Soybean | nucleus | 36.1 | 34.6 |
| Bra034373.1-P | Field mustard | nucleus | 26.35 | 33.95 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 42.24 | 33.14 |
| CDY30525 | Canola | cytosol, nucleus, plastid | 25.27 | 31.82 |
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 13.36 | 31.62 |
| CDX77140 | Canola | nucleus | 23.83 | 30.7 |
| Solyc11g066840.1.1 | Tomato | nucleus | 33.94 | 29.65 |
| AT2G27840.3 | Thale cress | cytosol | 21.3 | 29.06 |
| PGSC0003DMT400005672 | Potato | nucleus | 29.96 | 28.62 |
| TraesCS3B01G450400.1 | Wheat | nucleus | 38.99 | 28.57 |
| KXG20698 | Sorghum | nucleus | 29.6 | 26.2 |
| PGSC0003DMT400068253 | Potato | cytosol | 32.13 | 25.0 |
| KXG33961 | Sorghum | nucleus | 24.19 | 24.91 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 9.03 | 22.32 |
| GSMUA_Achr8P01440_001 | Banana | extracellular | 18.77 | 21.85 |
| TraesCS3D01G410400.1 | Wheat | nucleus | 27.08 | 17.36 |
Protein Annotations
| MapMan:12.3.2.2 | Gene3D:2.60.120.340 | Gene3D:3.30.160.60 | EntrezGene:8078710 | UniProt:C5XFK2 | EnsemblPlants:EES04076 |
| ProteinID:EES04076 | ProteinID:EES04076.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| PFAM:PF12874 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | EnsemblPlantsGene:SORBI_3003G396600 |
| SUPFAM:SSF57667 | unigene:Sbi.5941 | UniParc:UPI0001A854CF | RefSeq:XP_002458956.1 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:70659296..70662320
Molecular Weight (calculated)
29708.7 Da
IEP (calculated)
4.806
GRAVY (calculated)
-0.942
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGKEVKP GATVSCEVGN DLVIHLSQAA LGEPKKASEN VIVSVKIDDK KLVLGTLSVE KHPQISCDLV FDKDFELSHN SKTASVFFCG YKSPVPQFES
101: YSGEDSSDEE LETDHQIPRN EISAAKVPVK GGIKVESSSS DDDDDDFTDS EMSDEDDSSD EDDVSTGDDS SDDSGSEEQT PTPKKTDVVV GKKRAIQAEA
201: PSGKKAKSEQ SAQKTGDKKV STHSAKQSSK TPDKSTKTPT ADKKSPKSGS HACKSCNKSF SSATGLESHQ KAKKHEA
101: YSGEDSSDEE LETDHQIPRN EISAAKVPVK GGIKVESSSS DDDDDDFTDS EMSDEDDSSD EDDVSTGDDS SDDSGSEEQT PTPKKTDVVV GKKRAIQAEA
201: PSGKKAKSEQ SAQKTGDKKV STHSAKQSSK TPDKSTKTPT ADKKSPKSGS HACKSCNKSF SSATGLESHQ KAKKHEA
001: MEFWGIEVKS GKPVTVTPEE GILIHVSQAS LGECKNKKGE FVPLHVKVGN QNLVLGTLST ENIPQLFCDL VFDKEFELSH TWGKGSVYFV GYKTPNIEPQ
101: GYSEEEEEEE EEVPAGNAAK AVAKPKAKPA EVKPAVDDEE DESDSDGMDE DDSDGEDSEE EEPTPKKPAS SKKRANETTP KAPVSAKKAK VAVTPQKTDE
201: KKKGGKAANQ SPKSASQVSC GSCKKTFNSG NALESHNKAK HAAAK
101: GYSEEEEEEE EEVPAGNAAK AVAKPKAKPA EVKPAVDDEE DESDSDGMDE DDSDGEDSEE EEPTPKKPAS SKKRANETTP KAPVSAKKAK VAVTPQKTDE
201: KKKGGKAANQ SPKSASQVSC GSCKKTFNSG NALESHNKAK HAAAK
Arabidopsis Description
HDT1Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.