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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 nucleus: 21132161
endoplasmic reticulum: 23041469
nucleus: 27291164
mitochondrion: 27780359
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 27780359 doi
G Mustafa, S Komatsu
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH22734 Soybean nucleus 43.97 69.95
KRH25160 Soybean nucleus 55.05 56.52
KRH30517 Soybean nucleus 49.19 52.25
GSMUA_Achr8P07580_001 Banana cytosol 17.92 48.67
HORVU3Hr1G092400.1 Barley nucleus 10.1 48.44
TraesCS1D01G454400.2 Wheat nucleus 45.6 45.02
KRG96126 Soybean nucleus 42.35 44.37
GSMUA_Achr3P22840_001 Banana nucleus 44.63 43.49
Os05t0597100-01 Rice nucleus 41.69 43.1
KRH67840 Soybean nucleus 39.41 42.01
EES19871 Sorghum nucleus 40.07 41.14
TraesCS1A01G445700.4 Wheat nucleus 41.37 41.1
EES20078 Sorghum nucleus 40.39 40.39
Zm00001d038832_P002 Maize nucleus 38.76 39.67
Zm00001d012095_P001 Maize cytosol, nucleus, plastid 19.54 39.22
EES04076 Sorghum nucleus 35.18 38.99
Zm00001d012092_P001 Maize nucleus 35.83 38.6
HORVU1Hr1G095140.2 Barley nucleus 18.57 37.5
GSMUA_Achr10P... Banana plastid 43.0 35.29
Os01t0909150-00 Rice cytosol 13.68 35.29
Zm00001d042433_P001 Maize nucleus 27.69 34.55
KXG33961 Sorghum nucleus 28.01 31.97
KXG20698 Sorghum nucleus 30.94 30.35
Zm00001d011139_P005 Maize cytosol 28.34 27.97
Os01t0909100-01 Rice nucleus, peroxisome 22.15 27.87
TraesCS3B01G450400.1 Wheat nucleus 33.88 27.51
Os01t0909500-02 Rice cytosol 20.52 26.69
Zm00001d014548_P002 Maize cytosol 16.29 26.04
TraesCS3D01G410300.2 Wheat nucleus 28.01 23.63
TraesCS3B01G450300.1 Wheat nucleus 28.34 22.72
TraesCS3A01G415200.1 Wheat nucleus 28.99 22.08
HORVU3Hr1G092390.4 Barley nucleus, plastid 28.01 20.33
TraesCS3D01G410400.1 Wheat nucleus 23.13 16.44
Protein Annotations
EMBL:ACUP02007721EnsemblPlants:KRH26575EnsemblPlantsGene:GLYMA_12G181400Gene3D:2.60.120.340Gene3D:3.30.160.60GO:GO:0003674
GO:GO:0003676GO:GO:0005488InterPro:IPR013087InterPro:Znf_C2H2_typePANTHER:PTHR31802PANTHER:PTHR31802:SF8
PFscan:PS50157ProteinID:KRH26575ProteinID:KRH26575.1ScanProsite:PS00028SEG:segUniParc:UPI000233D5D6
UniProt:I1LTR4MapMan:12.3.2.2::::
Description
hypothetical protein
Coordinates
chr12:-:34193664..34197110
Molecular Weight (calculated)
33316.9 Da
IEP (calculated)
4.644
GRAVY (calculated)
-1.162
Length
307 amino acids
Sequence
(BLAST)
001: MEFWGAEVKV GESVKVDPAE FEACIHLSQA ALGEAKKDKS NEPVVLYLKV GQQKFVLGTL SREKIPQIPL ELVLEKEFEL SHNSKNASVH FCGYKAFYDA
101: GDDSEEDEFT DSEEDVPLLK AENGKPETKA EELKVPESKK AVAKASASAK QVKIVEPKKD NEEDSDDDSD EDDDFGSSDE EMEDADSDSD DESDDKEDDD
201: EETHPKNKKA DLGKKRPNES ASKTPVSSKK AKNATPEKTD GKKGGHTATP HPAKKGGKTP SSEAKAKTPN NEAKTPMSGG LSCKSCSKSF NSESGLQQHN
301: KAKHGGQ
Best Arabidopsis Sequence Match ( AT5G03740.1 )
(BLAST)
001: MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA
Arabidopsis Description
HDT3HDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UP12]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.