Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P07580_001 | Banana | cytosol | 19.25 | 63.72 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 49.47 | 58.73 |
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 16.04 | 51.28 |
| GSMUA_Achr8P01440_001 | Banana | extracellular | 31.28 | 49.16 |
| Solyc09g009030.2.1 | Tomato | nucleus | 34.76 | 48.33 |
| PGSC0003DMT400006927 | Potato | nucleus | 33.42 | 46.47 |
| AT3G44750.1 | Thale cress | nucleus | 28.61 | 43.67 |
| VIT_08s0007g03940.t01 | Wine grape | nucleus | 34.76 | 43.62 |
| PGSC0003DMT400021644 | Potato | nucleus | 33.42 | 43.55 |
| KRH26575 | Soybean | nucleus | 35.29 | 43.0 |
| KRH67840 | Soybean | nucleus | 32.35 | 42.01 |
| Solyc10g085560.1.1 | Tomato | nucleus | 34.22 | 41.69 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 38.24 | 40.51 |
| KRG96126 | Soybean | nucleus | 31.55 | 40.27 |
| KRH22734 | Soybean | nucleus | 20.05 | 38.86 |
| CDY26948 | Canola | nucleus | 26.47 | 38.08 |
| KRH30517 | Soybean | nucleus | 29.41 | 38.06 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 11.23 | 37.5 |
| KRH25160 | Soybean | nucleus | 29.95 | 37.46 |
| CDY35706 | Canola | nucleus | 29.95 | 37.33 |
| Bra020209.1-P | Field mustard | nucleus | 29.68 | 37.0 |
| AT5G22650.1 | Thale cress | nucleus | 30.21 | 36.93 |
| Bra002425.1-P | Field mustard | nucleus | 25.67 | 36.78 |
| CDY59279 | Canola | cytosol | 15.78 | 36.42 |
| CDX92341 | Canola | nucleus | 25.13 | 36.02 |
| AT5G03740.1 | Thale cress | nucleus | 28.07 | 35.71 |
| CDX71005 | Canola | nucleus | 26.2 | 35.64 |
| Bra006629.1-P | Field mustard | nucleus | 25.94 | 35.53 |
| CDX88790 | Canola | nucleus | 25.67 | 34.91 |
| PGSC0003DMT400005672 | Potato | nucleus | 25.94 | 33.45 |
| CDY09158 | Canola | plastid | 30.48 | 32.76 |
| CDX70287 | Canola | nucleus | 17.11 | 32.65 |
| Solyc11g066840.1.1 | Tomato | nucleus | 27.54 | 32.49 |
| CDY09155 | Canola | cytosol | 15.51 | 31.52 |
| Bra020206.1-P | Field mustard | cytosol | 15.51 | 31.52 |
| CDY10359 | Canola | nucleus | 29.14 | 30.62 |
| Bra009513.1-P | Field mustard | nucleus, plastid | 29.41 | 30.56 |
| CDY09153 | Canola | cytosol | 13.64 | 29.31 |
| Bra020204.1-P | Field mustard | cytosol | 13.64 | 29.31 |
| PGSC0003DMT400068253 | Potato | cytosol | 26.2 | 27.53 |
| CDY59274 | Canola | plastid | 16.58 | 14.42 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P04780_001 | EnsemblPlants:GSMUA_Achr10T04780_001 | EnsemblPlantsGene:GSMUA_Achr10G04780_001 | Gene3D:2.60.120.340 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | UniParc:UPI0002949504 | UniProt:M0RFF5 | MapMan:12.3.2.2 | : |
Description
Putative Histone deacetylase HDT1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G04780_001]
Coordinates
chr10:+:14415033..14418575
Molecular Weight (calculated)
40722.0 Da
IEP (calculated)
4.775
GRAVY (calculated)
-0.994
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MYIYIYISAI RSLQGIPGGF KLPLGAQNPN PPLNSPFSPR APFRPLPSRH SIPTAMEFWG LEIKPEETVK VDPGEDKYLH LSQASLGETK KGNENILVYV
101: KFNNQKLVLG TLSAEKCAQI QYDLVFEKEF ELSHSSNNAS VYLCGYKTAA LEADEYPFDL PSDSDADEDI QLDQKTNGKS IVKVEQTKST EGKPKVPQAN
201: APASKAKPKI EELKKADKQK PNKDDDEDVD GEESDEDESD DDEDMVEAED DSEDEDEDEV ESSDEDEAPV KMAEPPNKRP AGSALKTPVS EKKAKLISPG
301: KGESQKKGGA AKKDGHSATP IPAKQSGKTP AKNDKSKQQT PKSAGSVNCK SCGKNFNSDN ALQSHTKAKH SAGK
101: KFNNQKLVLG TLSAEKCAQI QYDLVFEKEF ELSHSSNNAS VYLCGYKTAA LEADEYPFDL PSDSDADEDI QLDQKTNGKS IVKVEQTKST EGKPKVPQAN
201: APASKAKPKI EELKKADKQK PNKDDDEDVD GEESDEDESD DDEDMVEAED DSEDEDEDEV ESSDEDEAPV KMAEPPNKRP AGSALKTPVS EKKAKLISPG
301: KGESQKKGGA AKKDGHSATP IPAKQSGKTP AKNDKSKQQT PKSAGSVNCK SCGKNFNSDN ALQSHTKAKH SAGK
001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA
Arabidopsis Description
HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.