Factsheet for AT3G44750.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P07580_001	Banana	cytosol	23.27	50.44
VIT_03s0132g00020.t01	Wine grape	nucleus	20.41	42.73
AT5G22650.1	Thale cress	nucleus	46.53	37.25
AT5G03740.1	Thale cress	nucleus	42.86	35.71
VIT_06s0061g01240.t01	Wine grape	nucleus	50.61	35.13
GSMUA_Achr3P22840_001	Banana	nucleus	44.49	34.6
PGSC0003DMT400005672	Potato	nucleus	37.96	32.07
AT2G27840.3	Thale cress	cytosol	26.53	32.02
Solyc11g066840.1.1	Tomato	nucleus	39.18	30.28
GSMUA_Achr10P...	Banana	plastid	43.67	28.61
VIT_06s0009g03080.t01	Wine grape	nucleus	12.65	27.68
PGSC0003DMT400068253	Potato	cytosol	40.0	27.53

Protein Annotations

MapMan:12.3.2.2	Gene3D:2.60.120.340	EntrezGene:823605	ProteinID:AAB70032.1	ProteinID:AEE77944.1	EMBL:AF195545
ArrayExpress:AT3G44750	EnsemblPlantsGene:AT3G44750	RefSeq:AT3G44750	TAIR:AT3G44750	RefSeq:AT3G44750-TAIR-G	EnsemblPlants:AT3G44750.1
TAIR:AT3G44750.1	EMBL:AY065396	EMBL:AY096729	Unigene:At.20950	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009294	GO:GO:0009791	GO:GO:0009944	GO:GO:0009987	GO:GO:0010162	GO:GO:0016043
GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0046872	GO:GO:0048364
Symbol:HD2A	Symbol:HDA3	InterPro:IPR013087	RefSeq:NP_566872.1	PO:PO:0000013	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR31802
PANTHER:PTHR31802:SF8	UniProt:Q9FVE6	UniParc:UPI000003B372	InterPro:Znf_C2H2_type	SEG:seg	:

Description

HDT1Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6]

Coordinates

chr3:+:16297656..16299876

Molecular Weight (calculated)

26373.5 Da

IEP (calculated)

4.857

GRAVY (calculated)

-0.898

Length

245 amino acids

Sequence
(BLAST)

001: MEFWGIEVKS GKPVTVTPEE GILIHVSQAS LGECKNKKGE FVPLHVKVGN QNLVLGTLST ENIPQLFCDL VFDKEFELSH TWGKGSVYFV GYKTPNIEPQ
101: GYSEEEEEEE EEVPAGNAAK AVAKPKAKPA EVKPAVDDEE DESDSDGMDE DDSDGEDSEE EEPTPKKPAS SKKRANETTP KAPVSAKKAK VAVTPQKTDE
201: KKKGGKAANQ SPKSASQVSC GSCKKTFNSG NALESHNKAK HAAAK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.