Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 75.89 | 72.65 |
| HORVU3Hr1G092400.1 | Barley | nucleus | 16.07 | 28.12 |
| HORVU1Hr1G095140.2 | Barley | nucleus | 32.14 | 23.68 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 66.96 | 21.25 |
| Bra002425.1-P | Field mustard | nucleus | 33.93 | 14.56 |
| CDX92341 | Canola | nucleus | 33.93 | 14.56 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 40.18 | 14.29 |
| VIT_08s0007g03940.t01 | Wine grape | nucleus | 37.5 | 14.09 |
| CDY35706 | Canola | nucleus | 37.5 | 14.0 |
| CDY26948 | Canola | nucleus | 32.14 | 13.85 |
| EES19871 | Sorghum | nucleus | 35.71 | 13.38 |
| Bra020209.1-P | Field mustard | nucleus | 35.71 | 13.33 |
| AT5G22650.1 | Thale cress | nucleus | 35.71 | 13.07 |
| AT3G44750.1 | Thale cress | nucleus | 27.68 | 12.65 |
| TraesCS1A01G445700.4 | Wheat | nucleus | 34.82 | 12.62 |
| Bra006629.1-P | Field mustard | nucleus | 30.36 | 12.45 |
| EES20078 | Sorghum | nucleus | 33.93 | 12.38 |
| CDX71005 | Canola | nucleus | 30.36 | 12.36 |
| Zm00001d038832_P002 | Maize | nucleus | 33.04 | 12.33 |
| TraesCS1D01G454400.2 | Wheat | nucleus | 33.93 | 12.22 |
| CDX88790 | Canola | nucleus | 29.46 | 12.0 |
| CDY09158 | Canola | plastid | 35.71 | 11.49 |
| GSMUA_Achr10P... | Banana | plastid | 37.5 | 11.23 |
| Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 15.18 | 11.11 |
| Os05t0597100-01 | Rice | nucleus | 29.46 | 11.11 |
| KXG33961 | Sorghum | nucleus | 25.89 | 10.78 |
| PGSC0003DMT400005672 | Potato | nucleus | 27.68 | 10.69 |
| Zm00001d042433_P001 | Maize | nucleus | 23.21 | 10.57 |
| Solyc11g066840.1.1 | Tomato | nucleus | 27.68 | 9.78 |
| PGSC0003DMT400068253 | Potato | cytosol | 29.46 | 9.27 |
| Zm00001d012092_P001 | Maize | nucleus | 23.21 | 9.12 |
| EES04076 | Sorghum | nucleus | 22.32 | 9.03 |
| KXG20698 | Sorghum | nucleus | 24.11 | 8.63 |
| TraesCS3B01G450400.1 | Wheat | nucleus | 27.68 | 8.2 |
| CDY59279 | Canola | cytosol | 10.71 | 7.41 |
| TraesCS3D01G410300.2 | Wheat | nucleus | 21.43 | 6.59 |
| Zm00001d011139_P005 | Maize | cytosol | 17.86 | 6.43 |
| TraesCS3A01G415200.1 | Wheat | nucleus | 22.32 | 6.2 |
| TraesCS3B01G450300.1 | Wheat | nucleus | 20.54 | 6.01 |
| HORVU3Hr1G092390.4 | Barley | nucleus, plastid | 22.32 | 5.91 |
| Os01t0909500-02 | Rice | cytosol | 9.82 | 4.66 |
| Bra020204.1-P | Field mustard | cytosol | 7.14 | 4.6 |
| CDY09153 | Canola | cytosol | 7.14 | 4.6 |
| Zm00001d014548_P002 | Maize | cytosol | 5.36 | 3.12 |
| CDY59274 | Canola | plastid | 10.71 | 2.79 |
| Os01t0909100-01 | Rice | nucleus, peroxisome | 3.57 | 1.64 |
| TraesCS3D01G410400.1 | Wheat | nucleus | 6.25 | 1.62 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 0.89 | 0.88 |
| Os01t0909150-00 | Rice | cytosol | 0.89 | 0.84 |
| Bra020206.1-P | Field mustard | cytosol | 0.0 | 0.0 |
| CDY09155 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_06s0009g03080 | EMBL:FN595504 | EnsemblPlants:VIT_06s0009g03080.t01 | EnsemblPlantsGene:VIT_06s0009g03080 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 |
| ProteinID:CCB49068 | ProteinID:CCB49068.1 | SEG:seg | UniParc:UPI000210985E | UniProt:F6HA61 | MapMan:35.2 |
Description
No Description!
Coordinates
chr6:-:16128372..16130204
Molecular Weight (calculated)
11842.9 Da
IEP (calculated)
10.010
GRAVY (calculated)
-0.951
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDAEDGSDE GSESEEGTCI SSVQPGKKRP TESATKTLVP AKKAKLVSPQ NTDGKKGGAH TATPHPNKKA GKTPATGDKG KGQSPKFWWP SLLQILQQDI
101: QLRKCASIPF QG
101: QLRKCASIPF QG
001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA
Arabidopsis Description
HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.