Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 20.81 | 52.99 |
| PGSC0003DMT400021644 | Potato | nucleus | 50.34 | 52.26 |
| PGSC0003DMT400006927 | Potato | nucleus | 46.64 | 51.67 |
| Solyc09g009030.2.1 | Tomato | nucleus | 46.31 | 51.3 |
| HORVU3Hr1G092400.1 | Barley | nucleus | 10.74 | 50.0 |
| GSMUA_Achr8P07580_001 | Banana | cytosol | 18.79 | 49.56 |
| Solyc10g085560.1.1 | Tomato | nucleus | 51.01 | 49.51 |
| KRH67840 | Soybean | nucleus | 47.32 | 48.96 |
| KRG96126 | Soybean | nucleus | 46.64 | 47.44 |
| AT5G03740.1 | Thale cress | nucleus | 44.63 | 45.24 |
| Os05t0597100-01 | Rice | nucleus | 43.29 | 43.43 |
| GSMUA_Achr3P22840_001 | Banana | nucleus | 44.63 | 42.22 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 50.0 | 42.21 |
| EES19871 | Sorghum | nucleus | 41.28 | 41.14 |
| TraesCS1D01G454400.2 | Wheat | nucleus | 42.28 | 40.51 |
| HORVU1Hr1G095140.2 | Barley | nucleus | 20.47 | 40.13 |
| TraesCS1A01G445700.4 | Wheat | nucleus | 40.27 | 38.84 |
| EES20078 | Sorghum | nucleus | 39.93 | 38.76 |
| Zm00001d038832_P002 | Maize | nucleus | 38.59 | 38.33 |
| EES04076 | Sorghum | nucleus | 35.57 | 38.27 |
| CDX70287 | Canola | nucleus | 24.83 | 37.76 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 14.09 | 37.5 |
| Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 19.13 | 37.25 |
| Zm00001d012092_P001 | Maize | nucleus | 35.57 | 37.19 |
| Bra009513.1-P | Field mustard | nucleus, plastid | 43.96 | 36.39 |
| CDY10359 | Canola | nucleus | 42.95 | 35.96 |
| Zm00001d042433_P001 | Maize | nucleus | 28.86 | 34.96 |
| GSMUA_Achr10P... | Banana | plastid | 43.62 | 34.76 |
| Os01t0909150-00 | Rice | cytosol | 13.76 | 34.45 |
| KXG33961 | Sorghum | nucleus | 27.85 | 30.86 |
| Zm00001d011139_P005 | Maize | cytosol | 31.88 | 30.55 |
| KXG20698 | Sorghum | nucleus | 31.54 | 30.03 |
| TraesCS3B01G450400.1 | Wheat | nucleus | 35.91 | 28.31 |
| Os01t0909100-01 | Rice | nucleus, peroxisome | 20.47 | 25.0 |
| Zm00001d014548_P002 | Maize | cytosol | 15.77 | 24.48 |
| TraesCS3D01G410300.2 | Wheat | nucleus | 28.86 | 23.63 |
| Os01t0909500-02 | Rice | cytosol | 18.12 | 22.88 |
| TraesCS3B01G450300.1 | Wheat | nucleus | 28.52 | 22.19 |
| HORVU3Hr1G092390.4 | Barley | nucleus, plastid | 30.2 | 21.28 |
| TraesCS3A01G415200.1 | Wheat | nucleus | 28.52 | 21.09 |
| TraesCS3D01G410400.1 | Wheat | nucleus | 22.82 | 15.74 |
Protein Annotations
| EntrezGene:100252840 | wikigene:100252840 | MapMan:12.3.2.2 | ProteinID:CCB55397 | ProteinID:CCB55397.1 | UniProt:F6HKH5 |
| EMBL:FN595991 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009651 |
| GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0045892 | InterPro:IPR013087 |
| EntrezGene:LOC100252840 | wikigene:LOC100252840 | PFAM:PF12874 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR31802 |
| PANTHER:PTHR31802:SF8 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0002109E4A | ArrayExpress:VIT_08s0007g03940 | EnsemblPlantsGene:VIT_08s0007g03940 |
| EnsemblPlants:VIT_08s0007g03940.t01 | RefSeq:XP_002277422 | RefSeq:XP_002277422.1 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg |
Description
No Description!
Coordinates
chr8:+:17962883..17966916
Molecular Weight (calculated)
32849.7 Da
IEP (calculated)
5.226
GRAVY (calculated)
-1.184
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWGVEVKA GEPLEVVPGD DMLVHISQAS LGEIKKDKGN ELVCLYANIG GQKLVLGTLS AEKFPQISFD LVFEKKFELS HNWKNGSVYF CGYKAANSVE
101: YPFHGKPQQL KQEKPESAAA KQVKIVEPNK DAKSPKENDD DSDKDSDESM DDEDESSEDE DMVNDRSASS EDEDDDENED NEDDKNEISK KKETPKKAGP
201: SKKRPTESVS KTPVPDKKAK FVTPQKTDGK KSDDKKSGGH VATPYPSKQA GKTPANTEKP KQQVQKSGGS FSCKSCNRSF NSENALQSHT KAKHTAAK
101: YPFHGKPQQL KQEKPESAAA KQVKIVEPNK DAKSPKENDD DSDKDSDESM DDEDESSEDE DMVNDRSASS EDEDDDENED NEDDKNEISK KKETPKKAGP
201: SKKRPTESVS KTPVPDKKAK FVTPQKTDGK KSDDKKSGGH VATPYPSKQA GKTPANTEKP KQQVQKSGGS FSCKSCNRSF NSENALQSHT KAKHTAAK
001: MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA
Arabidopsis Description
HDT3HDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UP12]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.