Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0909100-01 | Rice | nucleus, peroxisome | 26.27 | 25.41 |
| KRH22734 | Soybean | nucleus | 20.76 | 25.39 |
| Os01t0909150-00 | Rice | cytosol | 12.29 | 24.37 |
| KRH30517 | Soybean | nucleus | 25.42 | 20.76 |
| KRH25160 | Soybean | nucleus | 26.27 | 20.74 |
| KRH26575 | Soybean | nucleus | 26.69 | 20.52 |
| Os05t0597100-01 | Rice | nucleus | 25.0 | 19.87 |
| PGSC0003DMT400021644 | Potato | nucleus | 23.31 | 19.16 |
| KRH67840 | Soybean | nucleus | 22.88 | 18.75 |
| Solyc10g085560.1.1 | Tomato | nucleus | 23.73 | 18.24 |
| PGSC0003DMT400006927 | Potato | nucleus | 20.76 | 18.22 |
| VIT_08s0007g03940.t01 | Wine grape | nucleus | 22.88 | 18.12 |
| KRG96126 | Soybean | nucleus | 22.03 | 17.75 |
| Solyc09g009030.2.1 | Tomato | nucleus | 19.92 | 17.47 |
| Solyc11g066840.1.1 | Tomato | nucleus | 23.31 | 17.35 |
| PGSC0003DMT400005672 | Potato | nucleus | 20.76 | 16.9 |
| PGSC0003DMT400068253 | Potato | cytosol | 23.73 | 15.73 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 22.88 | 15.3 |
| GSMUA_Achr8P01440_001 | Banana | extracellular | 13.98 | 13.87 |
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 5.51 | 11.11 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 4.66 | 9.82 |
Protein Annotations
| EMBL:AK099909 | EnsemblPlants:Os01t0909500-02 | EnsemblPlantsGene:Os01g0909500 | Gene3D:2.60.120.340 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF7 |
| ProteinID:BAS75825.1 | UniParc:UPI000188AE11 | UniProt:B7EPQ1 | MapMan:12.3.2.2 | : | : |
Description
Hypothetical conserved gene. (Os01t0909500-02);Similar to cDNA clone:J013116D08, full insert sequence. (Os01t0909500-03)
Coordinates
chr1:-:39616243..39623317
Molecular Weight (calculated)
26408.3 Da
IEP (calculated)
4.285
GRAVY (calculated)
-0.807
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVDFWGVVI EPCNKKEIFC PEDTLYHLTS VALDEAYGLK DSNVKVFVEV NDEKFAIGTL SSKRHPHIKV DFCFKKNFQL FHTSLISKVA FCGYQVKNLG
101: KFTDSEGDES DEEVPPGIRL YPKLDDNMIK EAQKSKLPAK SATVASAMQK AFVKEIEHYE KSKADDDNNE RYRDISVVGE STGNEDSSDD ADYEGKSSDE
201: EETTAKEGES TDEKETPAKE GESSDEEETP AKVCVD
101: KFTDSEGDES DEEVPPGIRL YPKLDDNMIK EAQKSKLPAK SATVASAMQK AFVKEIEHYE KSKADDDNNE RYRDISVVGE STGNEDSSDD ADYEGKSSDE
201: EETTAKEGES TDEKETPAKE GESSDEEETP AKVCVD
001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA
Arabidopsis Description
HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.