Factsheet for GSMUA_Achr8P01440_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G092400.1	Barley	nucleus	10.92	40.62
HORVU1Hr1G095140.2	Barley	nucleus	24.79	38.82
GSMUA_Achr3P22840_001	Banana	nucleus	45.38	34.29
GSMUA_Achr10P...	Banana	plastid	49.16	31.28
EES19871	Sorghum	nucleus	33.19	26.42
TraesCS1A01G445700.4	Wheat	nucleus	33.61	25.89
TraesCS1D01G454400.2	Wheat	nucleus	32.35	24.76
Zm00001d038832_P002	Maize	nucleus	31.09	24.67
EES20078	Sorghum	nucleus	31.51	24.43
Os05t0597100-01	Rice	nucleus	28.99	23.23
CDY30525	Canola	cytosol, nucleus, plastid	17.65	19.09
Zm00001d012092_P001	Maize	nucleus	22.69	18.95
EES04076	Sorghum	nucleus	21.85	18.77
Bra034373.1-P	Field mustard	nucleus	16.81	18.6
KXG20698	Sorghum	nucleus	23.95	18.21
Zm00001d042433_P001	Maize	nucleus	18.49	17.89
CDX77140	Canola	nucleus	15.97	17.67
KXG33961	Sorghum	nucleus	18.91	16.73
AT2G27840.3	Thale cress	cytosol	13.45	15.76
Zm00001d012095_P001	Maize	cytosol, nucleus, plastid	10.08	15.69
TraesCS3B01G450400.1	Wheat	nucleus	23.11	14.55
TraesCS3D01G410300.2	Wheat	nucleus	21.85	14.29
Os01t0909500-02	Rice	cytosol	13.87	13.98
TraesCS3B01G450300.1	Wheat	nucleus	20.17	12.53
TraesCS3A01G415200.1	Wheat	nucleus	20.59	12.16
Zm00001d011139_P005	Maize	cytosol	15.55	11.9
HORVU3Hr1G092390.4	Barley	nucleus, plastid	18.91	10.64
GSMUA_Achr8P07580_001	Banana	cytosol	5.04	10.62
Os01t0909100-01	Rice	nucleus, peroxisome	10.5	10.25
Zm00001d014548_P002	Maize	cytosol	5.88	7.29
TraesCS3D01G410400.1	Wheat	nucleus	10.92	6.02

Protein Annotations

EnsemblPlants:GSMUA_Achr8P01440_001	EnsemblPlants:GSMUA_Achr8T01440_001	EnsemblPlantsGene:GSMUA_Achr8G01440_001	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR31802	PANTHER:PTHR31802:SF8	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0002964D0F	UniProt:M0TLP6	MapMan:35.2

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_61.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr8G01440_001]

Coordinates

chr8:+:1194460..1196108

Molecular Weight (calculated)

25459.8 Da

IEP (calculated)

4.613

GRAVY (calculated)

-1.218

Length

238 amino acids

Sequence
(BLAST)

001: MLICLALCKH ILAAIDFLDL DFDCWPTFPD FDESDSDADE DIQLEHIVNG KTNVKDEQPK STAGKPNVAS AKVKPKVAEL KKADKQKANK EDDEDDEESE
101: EDESDDDEDT AKADAEDDSE DEDESSDEDE ATVKKAEPSN KRPAGSALKT PVSEKKAKLR VSQGSGGSQK KGGAGKNDGQ PATPNPAKRS GKTPATNDKS
201: KQQTPKSAGS INCKSCGKKF NSDNGLQAHT KAKHGGAK

Best Arabidopsis Sequence Match ( AT5G03740.1 )
(BLAST)

001: MEFWGVEVKN GKPLHLDPGL DRLVHISQVA LGESKNNVTE PIQLYVTVGS DKLLIGTLSH EKFPQLSTEI VLERNFALSH TWKNGSVFFS GYKVDASDPE
101: PEDLIDDQLE AAGFKAAPKS AAKQVNFQLP NEDVKAKQDD DADGSEEDSS DDDDSENSGD EEEEKVTAES DSEEDDSSDD EEDDSSEEET PKKPEEPKKR
201: SAEPNSSKNP ASNKKAKFVT PQKTDSKKPH VHVATPHPSK QAGKNSGGGS TGETSKQQQT PKSAGAFGCK SCTRTFTSEM GLQSHTKAKH SAAA

Arabidopsis Description

HDT3HDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UP12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.