Factsheet for Zm00001d038832_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19871	Sorghum	nucleus	82.33	82.61
Os05t0597100-01	Rice	nucleus	57.33	57.91
TraesCS1D01G454400.2	Wheat	nucleus	55.33	53.38
TraesCS1A01G445700.4	Wheat	nucleus	54.33	52.75
HORVU1Hr1G095140.2	Barley	nucleus	26.33	51.97
Zm00001d012095_P001	Maize	cytosol, nucleus, plastid	24.67	48.37
VIT_03s0132g00020.t01	Wine grape	nucleus	18.33	47.01
Solyc09g009030.2.1	Tomato	nucleus	41.33	46.1
PGSC0003DMT400006927	Potato	nucleus	39.67	44.24
Zm00001d012092_P001	Maize	nucleus	40.33	42.46
PGSC0003DMT400021644	Potato	nucleus	40.0	41.81
KRH67840	Soybean	nucleus	40.0	41.67
Zm00001d011139_P005	Maize	cytosol	42.33	40.84
KRH25160	Soybean	nucleus	40.67	40.8
KRH30517	Soybean	nucleus	39.0	40.48
Solyc10g085560.1.1	Tomato	nucleus	41.0	40.07
KRG96126	Soybean	nucleus	38.0	38.91
KRH26575	Soybean	nucleus	39.67	38.76
VIT_08s0007g03940.t01	Wine grape	nucleus	38.33	38.59
PGSC0003DMT400005672	Potato	nucleus	35.33	36.55
VIT_06s0061g01240.t01	Wine grape	nucleus	43.0	36.54
Zm00001d042433_P001	Maize	nucleus	29.67	36.18
KRH22734	Soybean	nucleus	23.0	35.75
Solyc11g066840.1.1	Tomato	nucleus	35.67	33.75
VIT_06s0009g03080.t01	Wine grape	nucleus	12.33	33.04
Bra034373.1-P	Field mustard	nucleus	23.0	32.09
AT2G27840.3	Thale cress	cytosol	21.33	31.53
CDX77140	Canola	nucleus	22.33	31.16
GSMUA_Achr8P01440_001	Banana	extracellular	24.67	31.09
Zm00001d014548_P002	Maize	cytosol	19.33	30.21
CDY30525	Canola	cytosol, nucleus, plastid	22.0	30.0
PGSC0003DMT400068253	Potato	cytosol	34.0	28.65

Protein Annotations

MapMan:12.3.2.2	Gene3D:2.60.120.340	EntrezGene:542355	ProteinID:AQK87992.1	ProteinID:AQK87993.1	UniProt:B6SK06
EMBL:EU953071	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR31802	PANTHER:PTHR31802:SF8	UniParc:UPI000182BB1E	EnsemblPlantsGene:Zm00001d038832	EnsemblPlants:Zm00001d038832_P002
EnsemblPlants:Zm00001d038832_T002	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

Histone deacetylase HDT3

Coordinates

chr6:-:165376374..165379007

Molecular Weight (calculated)

32502.9 Da

IEP (calculated)

4.442

GRAVY (calculated)

-1.070

Length

300 amino acids

Sequence
(BLAST)

001: MEFWGLEVKP GSTVKCEPGY GFVLHLSQAA LGESKKSDNA LMYVKIDDQK LAIGTLSVDK NPHIQFDLIF DKEFELSHTS KTTSVFFTGY KVEQPFEEDE
101: MDLDSEDEDE ELNVPVVKEN GKADEKKQKS QEKAVAAPSK SSPDSKKSKD DDDSDEDETD DSDEDETDDS DEGLSPEEGD DDSSDEDDTS DDEEEDTPTP
201: KKPEVGKKRA AESSVLKTPL SDKKAKVATP SSQKTGGKKG AAVHVATPHP AKGKTIVNND KSVKSPKSAP KSGVPCKSCS KSFISETALQ AHSKAKHGGK

Best Arabidopsis Sequence Match ( AT5G22650.2 )
(BLAST)

001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEK KKGGHTATPH PAKKGGKSPV NANQSPKSGG QSSGGNNNKK PFNSGKQFGG SNNKGSNKGK
301: GKGRA

Arabidopsis Description

HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.