Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012095_P001 | Maize | cytosol, nucleus, plastid | 37.4 | 60.13 |
| Zm00001d012092_P001 | Maize | nucleus | 61.79 | 53.33 |
| EES04076 | Sorghum | nucleus | 51.63 | 45.85 |
| Solyc09g009030.2.1 | Tomato | nucleus | 34.15 | 31.23 |
| PGSC0003DMT400006927 | Potato | nucleus | 33.33 | 30.48 |
| Zm00001d038832_P002 | Maize | nucleus | 36.18 | 29.67 |
| PGSC0003DMT400021644 | Potato | nucleus | 33.74 | 28.92 |
| VIT_08s0007g03940.t01 | Wine grape | nucleus | 34.96 | 28.86 |
| KRH22734 | Soybean | nucleus | 21.95 | 27.98 |
| KRH67840 | Soybean | nucleus | 32.52 | 27.78 |
| KRH26575 | Soybean | nucleus | 34.55 | 27.69 |
| Solyc10g085560.1.1 | Tomato | nucleus | 34.55 | 27.69 |
| KRG96126 | Soybean | nucleus | 30.49 | 25.6 |
| Zm00001d014548_P002 | Maize | cytosol | 19.92 | 25.52 |
| KRH30517 | Soybean | nucleus | 29.67 | 25.26 |
| VIT_06s0061g01240.t01 | Wine grape | nucleus | 35.77 | 24.93 |
| VIT_03s0132g00020.t01 | Wine grape | nucleus | 11.79 | 24.79 |
| Solyc11g066840.1.1 | Tomato | nucleus | 31.3 | 24.29 |
| CDX77140 | Canola | nucleus | 21.14 | 24.19 |
| Bra034373.1-P | Field mustard | nucleus | 21.14 | 24.19 |
| AT2G27840.3 | Thale cress | cytosol | 19.51 | 23.65 |
| Zm00001d011139_P005 | Maize | cytosol | 29.67 | 23.47 |
| VIT_06s0009g03080.t01 | Wine grape | nucleus | 10.57 | 23.21 |
| CDY30525 | Canola | cytosol, nucleus, plastid | 20.73 | 23.18 |
| PGSC0003DMT400005672 | Potato | nucleus | 26.83 | 22.76 |
| KRH25160 | Soybean | nucleus | 27.64 | 22.74 |
| HORVU3Hr1G092400.1 | Barley | nucleus | 5.28 | 20.31 |
| TraesCS3B01G450400.1 | Wheat | nucleus | 30.08 | 19.58 |
| PGSC0003DMT400068253 | Potato | cytosol | 28.05 | 19.38 |
| GSMUA_Achr8P01440_001 | Banana | extracellular | 17.89 | 18.49 |
| TraesCS3D01G410400.1 | Wheat | nucleus | 23.58 | 13.43 |
Protein Annotations
| EnsemblPlants:Zm00001d042433_P001 | EnsemblPlants:Zm00001d042433_T001 | EnsemblPlantsGene:Zm00001d042433 | PANTHER:PTHR31802 | PANTHER:PTHR31802:SF8 | ProteinID:ONM35355.1 |
| SEG:seg | UniParc:UPI00084326D5 | UniProt:A0A1D6N3W9 | MapMan:12.3.2.2 | : | : |
Description
Histone deacetylase HDT1
Coordinates
chr3:+:167045705..167049086
Molecular Weight (calculated)
26253.9 Da
IEP (calculated)
4.316
GRAVY (calculated)
-0.904
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVGGQEVKP GATVSCKVGD GLVIHLSQAA LGESKKASEN AILSVNIDDK KLVLGTLSVE KHPQISCDLV FDKDFELPHN SKTQISAAKV PAKDDDDDVF
101: IILAMMMMIY SSDDDDDDFT TSDSDNEMSE EDDSSDEDEM SEEDDSSDED EMSGGADPSD DSSDESGSEH TSAPKKTDVV VGKKRAIKAE APYGKKAKSE
201: QSSQKTGDKA STSHPAKQSI KTPADKSRKT PTADKKSPKS GSHGCK
101: IILAMMMMIY SSDDDDDDFT TSDSDNEMSE EDDSSDEDEM SEEDDSSDED EMSGGADPSD DSSDESGSEH TSAPKKTDVV VGKKRAIKAE APYGKKAKSE
201: QSSQKTGDKA STSHPAKQSI KTPADKSRKT PTADKKSPKS GSHGCK
001: MEFWGIEVKS GKPVTVTPEE GILIHVSQAS LGECKNKKGE FVPLHVKVGN QNLVLGTLST ENIPQLFCDL VFDKEFELSH TWGKGSVYFV GYKTPNIEPQ
101: GYSEEEEEEV PAGNAAKAVA KPKAKPAEVK PAVDDEEDES DSDGMDEDDS DGEDSEEEEP TPKKPASSKK RANETTPKAP VSAKKAKVAV TPQKTDEKKK
201: GGKAANQSPK SASQVSCGSC KKTFNSGNAL ESHNKAKHAA AK
101: GYSEEEEEEV PAGNAAKAVA KPKAKPAEVK PAVDDEEDES DSDGMDEDDS DGEDSEEEEP TPKKPASSKK RANETTPKAP VSAKKAKVAV TPQKTDEKKK
201: GGKAANQSPK SASQVSCGSC KKTFNSGNAL ESHNKAKHAA AK
Arabidopsis Description
HDT1Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.